Bioconductor MethylKit

Showing : methylKit • reset

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214

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methylKit

updated 8 weeks ago by James W. MacDonald 67k • written 8 weeks ago by Satyanarayan • 0

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338

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methylKit

updated 5 months ago by alex.gos90 ▴ 10 • written 5 months ago by Krisztina • 0

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858

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methylKit

updated 8 months ago by James W. MacDonald 67k • written 8 months ago by CHEN • 0

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341

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methylKit

8 months ago Modoc Kesner ▴ 10

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732

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methylKit

16 months ago Andrés • 0

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766

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methRead methylkit

2.0 years ago liulip • 0

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872

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methyl methylKit

2.7 years ago hasche • 0

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1.9k

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GenomicRanges methylKit S4Vectors

updated 2.8 years ago by James W. MacDonald 67k • written 2.8 years ago by hasche • 0

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1.5k

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methylkit

updated 3.2 years ago by alex.gos90 ▴ 10 • written 3.5 years ago by hasche • 0

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1.7k

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methylation methylKit bsseq

updated 3.2 years ago by alex.gos90 ▴ 10 • written 3.4 years ago by Arindam ▴ 80

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1.6k

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annotateWithGeneParts methylKit

3.2 years ago tanmayroy1979 ▴ 20

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1.4k

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methylkit normalizecoverage NA

updated 6.2 years ago by altuna akalin ▴ 20 • written 6.2 years ago by GFM ▴ 20

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1.4k

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R bioconductor methylation methylkit

updated 6.4 years ago by altuna akalin ▴ 20 • written 6.4 years ago by nilaycan • 0

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1.9k

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methylkit Tutorial

updated 7.1 years ago by Martin Morgan 25k • written 7.1 years ago by s1432985 • 0

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2.0k

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methylKit

updated 7.5 years ago by altuna akalin ▴ 20 • written 7.5 years ago by ch8316f5eyu • 0

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2.0k

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methylKit

7.5 years ago kamal.fartiyal84 ▴ 10

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1.8k

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methylKit bioconductor

updated 8.3 years ago by Martin Morgan 25k • written 8.3 years ago by tangming2005 ▴ 200

17 results • Page 1 of 1

Recent ...

Replies

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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