Bioconductor Metab

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mzr metab

updated 6.3 years ago by Laurent Gatto 1.6k • written 6.3 years ago by martagarciapalacin • 0

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Answer: Surprising behavior for DEXseq dispersion estimate plot? by Snow • 0

Interesting adaptation of DEXseq, Elijah! Seeing those dispersion estimates makes me think about optimizing slopes, just like in [Snow Ride…

Answer: library org.Hs.eg.db failing to install by James W. MacDonald 68k

It should just install. ``` > library(BiocManager) Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14 ucrt) W…

Comment: Surprising behavior for DEXseq dispersion estimate plot? by Elijah • 0

Thank you so much for your quick reply! I was worried if some underlying technical artifact or unusual behavior would be causing the patter…

Answer: Surprising behavior for DEXseq dispersion estimate plot? by Michael Love 43k

The red points are just slowly moving toward -Inf. They tend to have variance < mean (if it were a simple design and you could just look at…

Answer: DESeq use in lipidomic analysis by Michael Love 43k

I would go for limma rather than a NB-based method. See the papers on limma for metabolomics / proteomics.

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A: WGCNA sample size minimum: why?

WGCNA sample size minimum: why?

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