Bioconductor Merge

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5.1k

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sce SingleCellExperiment merge

updated 20 months ago by mollyab12 • 0 • written 2.5 years ago by achoppe ▴ 10

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2.4k

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merge

updated 2.8 years ago by mcmurdie ▴ 20 • written 9.1 years ago by jpleonard2000 ▴ 10

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1.8k

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merge files R packages gene annotations

5.2 years ago mohammedtoufiq91 ▴ 10

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1.2k

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s4 dataframe left_join merge

updated 5.5 years ago by Hervé Pagès 16k • written 5.5 years ago by Michael Steinbaugh ▴ 90

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1.8k

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WGCNA cbind merge match gene names and Eigengene/module/colorlabels

6.9 years ago yifangt ▴ 20

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1.2k

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merge merge data frames

updated 7.4 years ago by Haiying.Kong ▴ 110 • written 7.4 years ago by shadhiksk • 0

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2.1k

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merge rnaseq files

updated 8.1 years ago by jayme.rickman • 0 • written 8.1 years ago by BioinfGuru ▴ 70

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3.5k

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granges merge reduce

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by nhejazi • 0

8 results • Page 1 of 1

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Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0

> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…

Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0

Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…

Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k

I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …

Votes

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Awards • All

Supporter to Paul Harrison ▴ 100

Popular Question to Mikhail Dozmorov ▴ 30