Bioconductor Merge

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5.3k

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sce SingleCellExperiment merge

updated 22 months ago by mollyab12 • 0 • written 2.7 years ago by achoppe ▴ 10

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2.4k

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merge

updated 3.0 years ago by mcmurdie ▴ 20 • written 9.3 years ago by jpleonard2000 ▴ 10

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1.9k

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merge files R packages gene annotations

5.3 years ago mohammedtoufiq91 ▴ 10

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1.3k

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s4 dataframe left_join merge

updated 5.7 years ago by Hervé Pagès 16k • written 5.7 years ago by Michael Steinbaugh ▴ 90

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1.8k

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WGCNA cbind merge match gene names and Eigengene/module/colorlabels

7.0 years ago yifangt ▴ 20

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1.2k

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merge merge data frames

updated 7.5 years ago by Haiying.Kong ▴ 110 • written 7.5 years ago by shadhiksk • 0

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2.2k

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merge rnaseq files

updated 8.2 years ago by jayme.rickman • 0 • written 8.2 years ago by BioinfGuru ▴ 70

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3.6k

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granges merge reduce

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by nhejazi • 0

8 results • Page 1 of 1

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Comment: minfi latest update for EPIC V2 chip by macdonaldfrench7286566 • 0

Yes, the most updated analysis for the EPIC V2 chip using the minfi package still involves using the annotations provided by jokergoo. *Th…

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

To compute CPM values from edgeR: ``` y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status) y <- …

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k

Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0

But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…

Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0

After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```

Votes

A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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