Bioconductor Merge

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5.1k

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sce SingleCellExperiment merge

updated 21 months ago by mollyab12 • 0 • written 2.6 years ago by achoppe ▴ 10

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2.4k

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merge

updated 2.9 years ago by mcmurdie ▴ 20 • written 9.2 years ago by jpleonard2000 ▴ 10

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1.8k

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merge files R packages gene annotations

5.2 years ago mohammedtoufiq91 ▴ 10

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1.2k

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s4 dataframe left_join merge

updated 5.6 years ago by Hervé Pagès 16k • written 5.6 years ago by Michael Steinbaugh ▴ 90

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1.8k

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WGCNA cbind merge match gene names and Eigengene/module/colorlabels

6.9 years ago yifangt ▴ 20

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1.2k

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merge merge data frames

updated 7.4 years ago by Haiying.Kong ▴ 110 • written 7.4 years ago by shadhiksk • 0

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2.1k

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merge rnaseq files

updated 8.1 years ago by jayme.rickman • 0 • written 8.1 years ago by BioinfGuru ▴ 70

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3.5k

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granges merge reduce

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by nhejazi • 0

8 results • Page 1 of 1

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Answer: ANOVA like approach of edgeR by Yunshun Chen ▴ 870

You could try the followings: > design <- model.matrix(~ 0 + group) > contrast <- makeContrasts(PvsL = 0.5*(L.pregnant + B.pregnan…

Answer: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael, so is there a way to work around this issue? Can I somehow make sure I can remove this batch effects without overcorrecti…

Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Votes

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

Awards • All

Scholar to Haibo Liu ▴ 20