Showing : meme • reset
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Plotting motif enrichment vs background - Jaspar core vertebrates
pwm motifs jaspar meme motif analysis
6.1 years ago rbronste ▴ 60
1
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2
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1.4k
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Split AME .tsv file into GRanges object or DataFrame
meme ame motif dataframe granges
updated 6.1 years ago by ★ 11k • written 6.1 years ago by ▴ 60
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835
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Trying to load several MEME formatted motifs for use in motifStack
motifstack meme
6.8 years ago aramp10 • 0
1
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2
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1.3k
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motifStack importMatrix problem reading meme file to pcm
motifstack meme
updated 6.8 years ago by ★ 1.3k • written 6.8 years ago by ▴ 10
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1.5k
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Import motifs in .meme format in MotifDB
motfdb pwmenrich meme
8.8 years ago enricoferrero ▴ 660
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1.5k
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Repetitive motifs on Illumina 450k derived sequences
illumina 450k motifs meme
8.9 years ago Gustavo Fernández Bayón ▴ 440
2
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1
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4.4k
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Please suggest any good motif Discovery tool in R-Bioconductor.
motif motifdb meme
updated 9.1 years ago by 16k • written 9.1 years ago by ▴ 50
7 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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