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meme
•
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0
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955
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Plotting motif enrichment vs background - Jaspar core vertebrates
pwm
motifs
jaspar
meme
motif analysis
6.2 years ago
rbronste
▴ 60
1
vote
2
replies
1.4k
views
Split AME .tsv file into GRanges object or DataFrame
meme
ame
motif
dataframe
granges
updated 6.3 years ago by
Michael Lawrence
★ 11k • written 6.3 years ago by
rbronste
▴ 60
0
votes
0
replies
851
views
Trying to load several MEME formatted motifs for use in motifStack
motifstack
meme
6.9 years ago
aramp10
• 0
1
vote
2
replies
1.3k
views
motifStack importMatrix problem reading meme file to pcm
motifstack
meme
updated 6.9 years ago by
Ou, Jianhong
★ 1.3k • written 6.9 years ago by
lmolla
▴ 10
0
votes
0
replies
1.5k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
8.9 years ago
enricoferrero
▴ 680
0
votes
0
replies
1.5k
views
Repetitive motifs on Illumina 450k derived sequences
illumina
450k
motifs
meme
9.0 years ago
Gustavo Fernández Bayón
▴ 440
2
votes
1
reply
4.5k
views
Please suggest any good motif Discovery tool in R-Bioconductor.
motif
motifdb
meme
updated 9.2 years ago by
Hervé Pagès
16k • written 9.2 years ago by
vinod.acear
▴ 50
7 results • Page
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Answer: I am having issues with bowtie2_build
by
James W. MacDonald
67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues
by
Michael Love
43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview
by
Guido Hooiveld
★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot
by
Quang NN
▴ 10
I see. Thank you ATpoint!
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
Prakash Sah
• 0
Thanks James!
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C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
Answer: Selection of correct coefficients or contrasts in DESeq2
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