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meme
•
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826
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Plotting motif enrichment vs background - Jaspar core vertebrates
pwm
motifs
jaspar
meme
motif analysis
5.6 years ago
rbronste
▴ 60
1
vote
2
replies
1.2k
views
Split AME .tsv file into GRanges object or DataFrame
meme
ame
motif
dataframe
granges
updated 5.7 years ago by
Michael Lawrence
★ 11k • written 5.7 years ago by
rbronste
▴ 60
0
votes
0
replies
718
views
Trying to load several MEME formatted motifs for use in motifStack
motifstack
meme
6.3 years ago
aramp10
• 0
1
vote
2
replies
1.2k
views
motifStack importMatrix problem reading meme file to pcm
motifstack
meme
updated 6.3 years ago by
Ou, Jianhong
★ 1.3k • written 6.3 years ago by
lmolla
▴ 10
0
votes
0
replies
1.3k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
8.3 years ago
enricoferrero
▴ 660
0
votes
0
replies
1.4k
views
Repetitive motifs on Illumina 450k derived sequences
illumina
450k
motifs
meme
8.5 years ago
Gustavo Fernández Bayón
▴ 440
2
votes
1
reply
4.0k
views
Please suggest any good motif Discovery tool in R-Bioconductor.
motif
motifdb
meme
updated 8.6 years ago by
Hervé Pagès
16k • written 8.6 years ago by
vinod.acear
▴ 50
7 results • Page
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Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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