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meme
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0
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1.0k
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Plotting motif enrichment vs background - Jaspar core vertebrates
pwm
motifs
jaspar
meme
motif analysis
6.4 years ago
rbronste
▴ 60
1
vote
2
replies
1.5k
views
Split AME .tsv file into GRanges object or DataFrame
meme
ame
motif
dataframe
granges
updated 6.5 years ago by
Michael Lawrence
★ 11k • written 6.5 years ago by
rbronste
▴ 60
0
votes
0
replies
915
views
Trying to load several MEME formatted motifs for use in motifStack
motifstack
meme
7.1 years ago
aramp10
• 0
1
vote
2
replies
1.4k
views
motifStack importMatrix problem reading meme file to pcm
motifstack
meme
updated 7.1 years ago by
Ou, Jianhong
★ 1.3k • written 7.1 years ago by
lmolla
▴ 10
0
votes
0
replies
1.5k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
9.1 years ago
enricoferrero
▴ 680
0
votes
0
replies
1.5k
views
Repetitive motifs on Illumina 450k derived sequences
illumina
450k
motifs
meme
9.3 years ago
Gustavo Fernández Bayón
▴ 440
2
votes
1
reply
4.7k
views
Please suggest any good motif Discovery tool in R-Bioconductor.
motif
motifdb
meme
updated 9.4 years ago by
Hervé Pagès
16k • written 9.4 years ago by
vinod.acear
▴ 50
7 results • Page
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Comment: Differing results with DESeq2
by
JKim
• 0
I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for gene expressio…
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE
by
James W. MacDonald
68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation
by
sergisayolspuig
▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2
by
cold.wolverine.arku
• 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
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A: Understanding contrasts limma
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
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