Bioconductor Medip-seq

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734

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R medip-seq MEDIPS

24 months ago Luomeng • 0

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2.1k

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MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD

3.7 years ago rtrivedi1 ▴ 10

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1.6k

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MEDIPS MeDIP-seq

updated 3.4 years ago by Lukas ▴ 20 • written 5.2 years ago by lshepard ▴ 40

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907

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medip-seq createset

updated 6.1 years ago by Bioconductor Community 0 • written 6.2 years ago by oussama.badad • 0

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1.2k

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medips medip-seq dna methylation dmr analysis

updated 6.2 years ago by Lukas Chavez ▴ 570 • written 6.2 years ago by mtefit • 0

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979

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medip-seq methylation CpGs

6.2 years ago saripalligautam86 ▴ 10

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2.3k

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medips bsgenome medip-seq

updated 6.9 years ago by Lukas Chavez ▴ 570 • written 6.9 years ago by vjain • 0

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8.0k

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diffbind medip-seq edger deseq2

updated 5 months ago by khanwaled68 • 0 • written 8.9 years ago by florian.noack ▴ 60

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2.2k

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R medips medip-seq

8.5 years ago • updated 7.6 years ago stb • 0

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1.9k

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medips medip-seq error lukas

updated 7.7 years ago by Matthias Lienhard ▴ 280 • written 7.7 years ago by anupriyaverma1408 • 0

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1.4k

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medips medip-seq peak finding luckas

updated 7.7 years ago by Lukas Chavez ▴ 570 • written 7.7 years ago by anupriyaverma1408 • 0

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1.4k

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medips R medip-seq pair-end reads

updated 8.2 years ago by Lukas Chavez ▴ 570 • written 8.2 years ago by stb • 0

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1.3k

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medips medip-seq R pair-end reads

updated 8.4 years ago by Lukas Chavez ▴ 570 • written 8.4 years ago by stb • 0

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1.7k

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R medip-seq medips bwa

updated 8.5 years ago by Lukas Chavez ▴ 570 • written 8.5 years ago by stb • 0

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1.5k

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annotation chippeakanno rattus norvegicus medip-seq

8.9 years ago Vang Le ▴ 80

15 results • Page 1 of 1

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Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k