Bioconductor Mean

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3.2k

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R ROC mean plot multiple roc curves

updated 6.2 years ago by chris86 ▴ 420 • written 6.2 years ago by sap940 • 0

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1.4k

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limma mean sd

updated 6.7 years ago by Aaron Lun ★ 28k • written 6.7 years ago by mheydarpour ▴ 10

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905

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Mean R

updated 7.1 years ago by Gordon Smyth 51k • written 7.1 years ago by kritikamish99 ▴ 10

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replies

2.0k

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deseq2 mean

updated 7.6 years ago by Michael Love 42k • written 7.6 years ago by asd • 0

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1.8k

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granges Rle coverage View mean

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by Christian Ruckert ▴ 170

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947

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mean standard deviation

updated 9.1 years ago by James W. MacDonald 67k • written 9.1 years ago by vinod.acear ▴ 50

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Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?

Votes

Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Comment: does anyone how to create rarefaction curves from a phyloseq object?

Answer: ANOVA like approach of edgeR

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