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mclust
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1.6k
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intra-cluster silhouette width
mclust
silhouette
fcp
7.1 years ago
Seymoo
• 0
0
votes
0
replies
1.7k
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no method for coercing this S4 class to a vector
mclust
s4vectors
S4
as.matrix
.FCS
8.8 years ago
anara92
• 0
0
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0
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1.4k
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Running Mclust package in R, using maximum a posteriori (MAP)
r
mclust
clustering
8.9 years ago
mabdulsa
• 0
0
votes
3
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2.9k
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Prior Control with Mclust package
R
mclust
clustering
updated 8.9 years ago by
Aedin Culhane
▴ 510 • written 8.9 years ago by
mabdulsa
• 0
2
votes
4
replies
4.9k
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Error and questions about clustering & ploting functions in r packages cluster and mclust regarding kmeans method
cluster
mclust
limma
clusplot
kmeans
9.8 years ago
svlachavas
▴ 840
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Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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