Showing : matchPattern • reset
0
votes
0
replies
1.1k
views
matchPattern function for multiple patterns in R
matchPattern automatic Biostrings for-loop
3.6 years ago adklts • 0
1
vote
2
replies
971
views
searching siRNA sequence (19bp) against human genome
searching siRNA sequence human genome GenomicAlignment Biostrings matchPattern
updated 4.8 years ago by ★ 4.5k • written 4.8 years ago by ▴ 50
1
vote
3
replies
1.5k
views
calculate frequency of non-overlapping matches for a motif in a XStringSet
Biostrings patternmatch biostrings matchpattern
updated 8.8 years ago by 16k • written 8.8 years ago by ▴ 40
4
votes
2
replies
1.8k
views
Ignoring N's on Ends of the Chromosome When Using matchPattern
bsgenome matchPattern
updated 9.4 years ago by 16k • written 9.4 years ago by ▴ 20
4 results • Page 1 of 1
Recent ...
Replies
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…
Comment: ANOVA like approach of edgeR by Yunshun Chen ▴ 880
If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …
Comment: ANOVA like approach of edgeR by SamGG ▴ 350
Simply remove the cell type from the model. design <- model.matrix(~targets$Status)
Answer: ANOVA like approach of edgeR by Yunshun Chen ▴ 880
You could try the followings: > design <- model.matrix(~ 0 + group) > contrast <- makeContrasts(PvsL = 0.5*(L.pregnant + B.pregnan…
Answer: Identical samples after deseq2 batch effect removal by maripane • 0
Thanks Michael, so is there a way to work around this issue? Can I somehow make sure I can remove this batch effects without overcorrecti…
Votes
Answer: ANOVA like approach of edgeR
A: ANOVA-like test with edgeR
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
Awards • All
Popular Question to Anna ▴ 20
Scholar to Haibo Liu ▴ 20
Popular Question to Talip ▴ 10
Popular Question to alexandre.blais ▴ 50
Popular Question to Fred Hutch (Recruiting) ▴ 40
Locations • All
WEHI, Melbourne, Australia, just now
United Kingdom, 5 minutes ago
France, 19 minutes ago
United Kingdom, 24 minutes ago
EMBL Heidelberg, 24 minutes ago
Traffic: 817 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6