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mart
•
reset
0
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replies
508
views
News:
Ensembl 113 has been released
ensembl
ensembldb
mart
biomaRt
6 months ago
Ensembl_Jorge
• 0
0
votes
1
reply
1.6k
views
Accessing local installation of biomart results in "Unexpected format to the list of available marts"
mart
martconfigurator
biomaRt
xml
updated 4.4 years ago by
Mike Smith
★ 6.6k • written 4.4 years ago by
anhvo711
• 0
1
vote
0
replies
1.0k
views
News:
Ensembl 100 has been released
biomart
ensembl
e100
mart
news
News
5.0 years ago
Thomas Maurel
▴ 800
0
votes
2
replies
2.7k
views
Error in martCheck(mart, c("ensembl", "ENSEMBL_MART_ENSEMBL")) : No dataset selected, please select a dataset first.
biomart
mart
ensembl
updated 5.1 years ago by
James W. MacDonald
68k • written 5.1 years ago by
didemdkn
• 0
0
votes
0
replies
1.0k
views
News:
Ensembl 99 has been released and renaming of species
biomart
ensembl
e99
mart
news
News
5.3 years ago
Thomas Maurel
▴ 800
0
votes
0
replies
1.2k
views
News:
Ensembl 98 has been released and renaming of species
biomart
ensembl
e98
mart
News
5.6 years ago
Thomas Maurel
▴ 800
0
votes
4
replies
1.4k
views
retrieve vgnc gene name or vgnc gene symbol from Biomart after differential analysis
biomart
mart
getbm
updated 6.7 years ago by
James W. MacDonald
68k • written 6.7 years ago by
cagenet34
▴ 20
1
vote
0
replies
1.4k
views
News:
Ensembl release 85 is out!
ensembl
biomart
release85
ensembl release
mart
News
8.8 years ago
Thomas Maurel
▴ 800
4
votes
9
replies
3.6k
views
News:
Ensembl release 84 is out!
ensembl
mart
release84
biomart
ensembl release
News
updated 9.0 years ago by
arielpaulson
▴ 20 • written 9.1 years ago by
Thomas Maurel
▴ 800
9 results • Page
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Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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