Bioconductor Mapping

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494

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mapping serverresponsetime STRINGdb

updated 8 months ago by damian.szk ▴ 110 • written 8 months ago by roberto.pellegrino • 0

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1.9k

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RNASeqData Rsubread mapping featurecounts

updated 18 months ago by James W. MacDonald 68k • written 18 months ago by vitoriastavis • 0

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835

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transcriptome Annotation mapping

2.9 years ago Ava • 0

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3.6k

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R sequencing alignment rsamtools mapping

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by nginet ▴ 10

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6.6k

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featurecounts hisat2 rna-seq mapping

updated 8.8 years ago by Wei Shi ★ 3.6k • written 8.8 years ago by Koen Van den Berge ▴ 180

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1.9k

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rsubread mapping featurecounts align

9.2 years ago Jo ▴ 30

6 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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