Bioconductor Mapping

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567

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mapping serverresponsetime STRINGdb

updated 11 months ago by damian.szk ▴ 110 • written 11 months ago by roberto.pellegrino • 0

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2.1k

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RNASeqData Rsubread mapping featurecounts

updated 21 months ago by James W. MacDonald 68k • written 21 months ago by vitoriastavis • 0

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899

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transcriptome Annotation mapping

3.1 years ago Ava • 0

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4.0k

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R sequencing alignment rsamtools mapping

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by nginet ▴ 10

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6.7k

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featurecounts hisat2 rna-seq mapping

updated 8.9 years ago by Wei Shi ★ 3.6k • written 9.0 years ago by Koen Van den Berge ▴ 180

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1.9k

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rsubread mapping featurecounts align

9.4 years ago Jo ▴ 30

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Answer: Unable to install a forged BSgenome package by James W. MacDonald 68k

Add a repos = NULL to `install.packages`. You may also need to either move the file to a dir that doesn't have a space in the name or you […

Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an by James W. MacDonald 68k

Have you figured out how to do this using tidy grammar? Using non-tidy grammar is quite simple, and perhaps you already know how to do that…

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You can use [bioc-run][1] to simplify things as well. [1]: https://github.com/Bioconductor/bioc-run/tree/devel

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You show how you modified the container, but not how you are running it, which is the critical part.

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply. > Per sample all counts are scaled by the same size factor so I strongly assume that something was parsed here …

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Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

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Popular Question to caroline.zanchi • 0