Showing : mapping • reset
0
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3
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STRINGdb server response time for mapping
mapping serverresponsetime STRINGdb
updated 6 months ago by ▴ 110 • written 6 months ago by • 0
0
votes
2
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1.7k
views
understanding differences in RSEM, STAR outputs and featureCounts
RNASeqData Rsubread mapping featurecounts
updated 16 months ago by 67k • written 16 months ago by • 0
0
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0
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787
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low mapping between annotated genome and transcriptome
transcriptome Annotation mapping
2.7 years ago Ava • 0
1
vote
1
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3.4k
views
Rsamtools : separating mapped and unmapped reads from BAM or SAM files (for a newbie)
R sequencing alignment rsamtools mapping
updated 6.7 years ago by 67k • written 6.7 years ago by ▴ 10
4
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5
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6.5k
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Hisat2 vs featureCounts summary statistics
featurecounts hisat2 rna-seq mapping
updated 8.6 years ago by ★ 3.6k • written 8.6 years ago by ▴ 180
0
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1
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1.9k
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RSubread 0% mapping
rsubread mapping featurecounts align
9.0 years ago Jo ▴ 30
6 results • Page 1 of 1
Recent ...
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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