Bioconductor MakeTxDbPackageFromUCSC

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maketxdbpackagefromucsc rtracklayer genomicfeatures

updated 6.5 years ago by James W. MacDonald 67k • written 6.5 years ago by lalchungnungabt17 • 0

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makeTxDbPackageFromUCSC genomicfeatures

7.9 years ago Ugo Borello ▴ 340

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Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

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Answer: EdgeR Biological CVs

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