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Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D
by
Michael Love
43k
hi, for questions about what statistical analysis approach to use, I recommend you work with a local statistician or someone familiar with …
Comment: Problems with oarfish + tximport + swish
by
Michael Love
43k
I'm not certain that this will work with Oarfish, the documentation only mentions Salmon and piscem.
I'd use tximport for now.
Answer: Problems with oarfish + tximport + swish
by
Michael Love
43k
> This is fine
Did tximeta() print that a matching transcriptome was found?
Answer: DESeq2 Heatmap
by
swbarnes2
★
1.4k
> However, I've been asked why the first column (vehicle/control) isn't
> entirely zero on the log fold change (logFC) expression scale.
…
Comment: Biomart and ensembl not working?
by
James W. MacDonald
67k
```
> library(biomaRt)
> mart <- useEnsembl("ensembl","hsapiens_gene_ensembl")
Ensembl site unresponsive, trying useast mirror
> mart
Objec…
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