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macs2
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150
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DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
8 weeks ago
yvonneh
• 0
0
votes
2
replies
911
views
ChIP-Seq Analysis: Comparing Unannotated Peaks with DESeq2
DESeq2
MACS2
19 months ago
vanbelj
▴ 30
0
votes
1
reply
1.9k
views
DiffBind Normalisation between Narrow/Broad Peaks from different peak callers
ChIPSeq
SICER2
DiffBind
MACS2
offtopic
updated 3.1 years ago by
James W. MacDonald
66k • written 3.1 years ago by
Yuan Tian
▴ 290
0
votes
2
replies
1.4k
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DiffBind consensus peak set
DiffBind
MACS2
updated 3.9 years ago by
Rory Stark
★ 5.2k • written 3.9 years ago by
ep15587
• 0
0
votes
2
replies
1.7k
views
DiffBind peaks input file format
DiffBind
macs2
updated 5.3 years ago by
Rory Stark
★ 5.2k • written 5.4 years ago by
Anna
• 0
0
votes
2
replies
999
views
Binding matrix creation DiffBind after MACS2 peak call
diffbind
macs2
updated 6.2 years ago by
Rory Stark
★ 5.2k • written 6.2 years ago by
Lauma R
▴ 10
1
vote
1
reply
2.3k
views
Importing Chip-Seq Peak MACS2 output (.xls) files into DBA object with Diffbind?
diffbind
macs2
chip-seq
6.6 years ago
chunhong.liu07
▴ 10
2
votes
3
replies
9.4k
views
DiffBind for ATAC-seq
atac-seq
diffbind
macs2
macs
peak finding
updated 7.3 years ago by
BioinfGuru
▴ 30 • written 7.8 years ago by
igor
▴ 50
2
votes
4
replies
5.0k
views
diffbind and macs2 output
diffbind
macs2
updated 8.5 years ago by
Gord Brown
▴ 670 • written 8.5 years ago by
tony
▴ 10
9 results • Page
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Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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