Bioconductor Logfoldchange

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DESeq2 p-adjusted-value Logfoldchange

updated 2.9 years ago by Michael Love 42k • written 2.9 years ago by bjen731 ▴ 10

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deseq2 R logfoldchange rna-seq

5.5 years ago • updated 5.3 years ago pierre.marin • 0

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deseq2 differential expression logfoldchange lfcshrink lfcthreshold

updated 3.5 years ago by Michael Love 42k • written 6.4 years ago by emi.sch ▴ 40

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DESeq2 logfoldchange counts

updated 5.8 years ago by Michael Love 42k • written 5.8 years ago by A ▴ 40

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1.1k

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noiseq logfoldchange

6.6 years ago Aurora ▴ 20

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deseq2 plotMA rnaseq logfoldchange

updated 6.7 years ago by Michael Love 42k • written 6.7 years ago by ap_vc21 • 0

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outliers deseq2 logfoldchange

6.8 years ago lirongrossmann ▴ 80

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1.9k

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deseq2 logfoldchange variancestabilizingtransformation

updated 7.1 years ago by Michael Love 42k • written 7.1 years ago by lirongrossmann ▴ 80

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deseq2 interactions logfoldchange

updated 7.3 years ago by Michael Love 42k • written 7.3 years ago by rrcutler ▴ 70

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deseq2 logfoldchange

updated 8.0 years ago by Michael Love 42k • written 8.0 years ago by rraadd_8 • 0

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limma logfoldchange

updated 8.3 years ago by Aaron Lun ★ 28k • written 8.3 years ago by szenitha ▴ 20

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limma logfoldchange

updated 8.4 years ago by Gordon Smyth 51k • written 8.4 years ago by moradzadeh_k921 • 0

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limma arrayweights logfoldchange neqc normalization

updated 8.5 years ago by svlachavas ▴ 830 • written 8.5 years ago by merella.stefania • 0

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deseq2 logfoldchange interactions

updated 8.7 years ago by Michael Love 42k • written 8.7 years ago by colaneri ▴ 30

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deseq2 logfoldchange

updated 8.7 years ago by Michael Love 42k • written 8.7 years ago by g.atla ▴ 10

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clustering pca deseq2 edger logfoldchange

updated 8.7 years ago by Michael Love 42k • written 8.7 years ago by g.atla ▴ 10

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dexseq logfoldchange exon usage

9.0 years ago Assa Yeroslaviz ★ 1.5k

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limma logfoldchange limma design matrix paired samples affymetrix microarrays

updated 9.2 years ago by Ryan C. Thompson ★ 7.9k • written 9.2 years ago by svlachavas ▴ 830

18 results • Page 1 of 1

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Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Comment: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…

Answer: Identical samples after deseq2 batch effect removal by Michael Love 42k

> 2 of my treatment samples have identical normalised gene expression for all genes. This sounds like a quantification / sample labeling…

Answer: Downloading Metagenomic Data with Higher Taxonomic Units by Levi Waldron ★ 1.1k

I'm sorry I missed the first post! Yes, it is easy to agglomerate ranks in curatedMetagenomicData datasets. See the example in the vignette…

Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

Votes

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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