Bioconductor Log2fc

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1.5k

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fgsea log2FC

8 months ago • updated 7 months ago V_Vibes • 0

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487

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DESeq2 log2FC vst()

updated 8 months ago by ATpoint ★ 4.7k • written 8 months ago by lifeonmars • 0

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920

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DESeq2 SingleCell log2FC

22 months ago paria.alipour • 0

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2.1k

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DESeq2 Log2FC RNASeqData

2.2 years ago Iwan • 0

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990

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DESeq2 LRT multifactorial up/down-reg log2FC

updated 2.2 years ago by James W. MacDonald 68k • written 2.2 years ago by Laia ▴ 10

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6.0k

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DESeq2 log2FC

2.4 years ago User000 • 0

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1.8k

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log2FC DESeq2 GSEA voom limma

updated 2.6 years ago by Gordon Smyth 52k • written 2.6 years ago by Yang Shi ▴ 10

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3.0k

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edger log2FC

written 5.4 years ago by matteo.buti • 0

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1.6k

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deseq2 log2fc standard error timecourse

updated 7.1 years ago by ellascottgm • 0 • written 7.1 years ago by Verena • 0

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1.6k

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deseq2 log2fc shrinkage

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by aec ▴ 90

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6.3k

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deseq2 L2FC log2fc

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by sup230 ▴ 30

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4.2k

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deseq2 log2fc

updated 8.4 years ago by Michael Love 43k • written 8.4 years ago by David R ▴ 90

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2.4k

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deseq2 chipseq counts log2fc error

updated 8.7 years ago by Michael Love 43k • written 8.7 years ago by robin.uchiyama • 0

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6.9k

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limma pvalue log2fc log2

updated 2.3 years ago by James W. MacDonald 68k • written 8.9 years ago by serpalma.v ▴ 60

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6.3k

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deseq2 differential gene expression log2fc

9.0 years ago • updated 8.9 years ago Osvaldo ▴ 40

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2.5k

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deseq2 R log2fc

updated 9.3 years ago by Michael Love 43k • written 9.3 years ago by Sushant Pawar • 0

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2.1k

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scan Log2FC

updated 9.6 years ago by Gordon Smyth 52k • written 9.6 years ago by Vani ▴ 20

17 results • Page 1 of 1

Recent ...

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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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