Bioconductor Log2fc

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fgsea log2FC

4 months ago V_Vibes • 0

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360

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DESeq2 log2FC vst()

updated 5 months ago by ATpoint ★ 4.5k • written 5 months ago by lifeonmars • 0

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832

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DESeq2 SingleCell log2FC

19 months ago paria.alipour • 0

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1.9k

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DESeq2 Log2FC RNASeqData

22 months ago Iwan • 0

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902

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DESeq2 LRT multifactorial up/down-reg log2FC

updated 23 months ago by James W. MacDonald 67k • written 23 months ago by Laia ▴ 10

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5.4k

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DESeq2 log2FC

2.2 years ago User000 • 0

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1.6k

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log2FC DESeq2 GSEA voom limma

updated 2.3 years ago by Gordon Smyth 51k • written 2.3 years ago by Yang Shi ▴ 10

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2.8k

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edger log2FC

written 5.1 years ago by matteo.buti • 0

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1.5k

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deseq2 log2fc standard error timecourse

updated 6.8 years ago by ellascottgm • 0 • written 6.8 years ago by Verena • 0

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1.5k

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deseq2 log2fc shrinkage

updated 6.9 years ago by Michael Love 42k • written 6.9 years ago by aec ▴ 90

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deseq2 L2FC log2fc

updated 7.3 years ago by Michael Love 42k • written 7.3 years ago by sup230 ▴ 30

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4.1k

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deseq2 log2fc

updated 8.1 years ago by Michael Love 42k • written 8.1 years ago by David R ▴ 90

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2.2k

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deseq2 chipseq counts log2fc error

updated 8.5 years ago by Michael Love 42k • written 8.5 years ago by robin.uchiyama • 0

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6.5k

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limma pvalue log2fc log2

updated 24 months ago by James W. MacDonald 67k • written 8.6 years ago by serpalma.v ▴ 60

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6.2k

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deseq2 differential gene expression log2fc

8.7 years ago Osvaldo ▴ 40

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2.5k

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deseq2 R log2fc

updated 9.0 years ago by Michael Love 42k • written 9.0 years ago by Sushant Pawar • 0

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scan Log2FC

updated 9.3 years ago by Gordon Smyth 51k • written 9.4 years ago by Vani ▴ 20

17 results • Page 1 of 1

Recent ...

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Comment: ANOVA like approach of edgeR by Yunshun Chen ▴ 870

If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …

Comment: ANOVA like approach of edgeR by SamGG ▴ 350

Simply remove the cell type from the model. design <- model.matrix(~targets$Status)

Answer: ANOVA like approach of edgeR by Yunshun Chen ▴ 870

You could try the followings: > design <- model.matrix(~ 0 + group) > contrast <- makeContrasts(PvsL = 0.5*(L.pregnant + B.pregnan…

Answer: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael, so is there a way to work around this issue? Can I somehow make sure I can remove this batch effects without overcorrecti…

Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Votes

A: ANOVA-like test with edgeR

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

Awards • All

Scholar to Haibo Liu ▴ 20