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Showing :
log2FC
•
reset
1
vote
13
replies
1.4k
views
Ranking the GSEA Results
fgsea
log2FC
7 months ago • updated 6 months ago
V_Vibes
• 0
1
vote
1
reply
436
views
DESeq2 - vst() - log2FC - no replicates
DESeq2
log2FC
vst()
updated 7 months ago by
ATpoint
★ 4.6k • written 7 months ago by
lifeonmars
• 0
0
votes
2
replies
890
views
Why my log2fcs are too high?
DESeq2
SingleCell
log2FC
21 months ago
paria.alipour
• 0
1
vote
4
replies
2.0k
views
Inverted Log2FC values after DEseq2 analysis
DESeq2
Log2FC
RNASeqData
2.1 years ago
Iwan
• 0
0
votes
1
reply
952
views
Log2FC in LRT vs Wald in multifactorial design
DESeq2
LRT
multifactorial
up/down-reg
log2FC
updated 2.1 years ago by
James W. MacDonald
67k • written 2.1 years ago by
Laia
▴ 10
0
votes
4
replies
5.8k
views
Understanding the Log2FoldChange calculated with DESeq2 and according to formula log2(treated/control)
DESeq2
log2FC
2.4 years ago
User000
• 0
2
votes
4
replies
1.7k
views
pre-ranked GSEA or not?
log2FC
DESeq2
GSEA
voom
limma
updated 2.5 years ago by
Gordon Smyth
52k • written 2.5 years ago by
Yang Shi
▴ 10
1
vote
5
replies
2.9k
views
log2FC calculation in EdgeR
edger
log2FC
written 5.3 years ago by
matteo.buti
• 0
2
votes
4
replies
1.6k
views
Standard error of log2FC from DESeq in time series experiment
deseq2
log2fc
standard error
timecourse
updated 7.0 years ago by
ellascottgm
• 0 • written 7.0 years ago by
Verena
• 0
0
votes
3
replies
1.6k
views
disagreement between log2FoldChange and lfcMLE in DESeq2
deseq2
log2fc
shrinkage
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
aec
▴ 90
1
vote
3
replies
6.2k
views
log2 fold change calculation for DE gene analysis
deseq2
L2FC
log2fc
updated 7.5 years ago by
Michael Love
43k • written 7.5 years ago by
sup230
▴ 30
0
votes
2
replies
4.2k
views
DESEq2 log2FoldChange and lfcSE calculations
deseq2
log2fc
updated 8.3 years ago by
Michael Love
43k • written 8.3 years ago by
David R
▴ 90
2
votes
2
replies
2.3k
views
Can I calculate counts from the base mean and log2fc outputs of DESeq2? Also, can I calculate error for counts values from lfcse output?
deseq2
chipseq
counts
log2fc
error
updated 8.7 years ago by
Michael Love
43k • written 8.7 years ago by
robin.uchiyama
• 0
6
votes
8
replies
6.7k
views
Does limma calculate pvalues using log2 fold changes or with linear values?
limma
pvalue
log2fc
log2
updated 2.2 years ago by
James W. MacDonald
67k • written 8.8 years ago by
serpalma.v
▴ 60
1
vote
10
replies
6.3k
views
DESEQ2: apparently wrong log2(fold-change) calculation
deseq2
differential gene expression
log2fc
8.9 years ago
Osvaldo
▴ 40
1
vote
3
replies
2.5k
views
Log2 foldchange in DESeq2
deseq2
R
log2fc
updated 9.2 years ago by
Michael Love
43k • written 9.2 years ago by
Sushant Pawar
• 0
1
vote
5
replies
2.1k
views
Log2FC values very small with SCAN
scan
Log2FC
updated 9.5 years ago by
Gordon Smyth
52k • written 9.6 years ago by
Vani
▴ 20
17 results • Page
1 of 1
Recent ...
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Comment: Unused arguments error without used arguments in GSVA?
by
1sunmic2
• 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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