Showing : lmfit • reset
1
vote
1
reply
972
views
Limma for paired and unpaired samples. Strange number of DEGs in unpaired samples
limma lmfit R DifferentialExpression
updated 2.1 years ago by ★ 4.2k • written 2.1 years ago by • 0
2
votes
3
replies
1.3k
views
lmFit, continuous exposure, adjustment covariates
lmFit
updated 2.1 years ago by 51k • written 3.0 years ago by • 0
0
votes
0
replies
798
views
Incorporating limma duplicateCorrelation() function into minfi dmpFinder() for a mixed model approach
minfi limma lmm lmfit dmpFinder
3.1 years ago kyleyxw • 0
3
votes
4
replies
1.1k
views
lmFit, number of proteins
lmFit
3.2 years ago • updated 3.0 years ago AyHi • 0
1
vote
5
replies
1.5k
views
Limma for proteomic data! Please Help!
limma voom lmfit ebayesfit
updated 4.2 years ago by 51k • written 4.2 years ago by • 0
4
votes
6
replies
754
views
mean log2CPM after model fit (lmFit)
limma lmFit mean expression level
updated 4.3 years ago by 66k • written 4.3 years ago by • 0
2
votes
2
replies
946
views
design matrix and correlate variable
limma lmfit
updated 5.2 years ago by ★ 28k • written 5.2 years ago by ▴ 10
2
votes
2
replies
1.2k
views
Different results from limma depending on whether or not I have an intercept term in my model
limma lmfit voom limma design matrix voomwithqualityweights
updated 5.5 years ago by 51k • written 5.5 years ago by ▴ 10
1
vote
8
replies
1.7k
views
Design matrix for regressing gene expression on a continuous variable - age
limma lmfit design matrix r
updated 6.0 years ago by ★ 28k • written 6.0 years ago by • 0
1
vote
7
replies
1.7k
views
model.matrix from GDS data
model.matrix lmFit eBayes GEOquery limma
6.4 years ago darthratus • 0
2
votes
3
replies
1.8k
views
Differential expression of nomalised and log2 transformed data in limma
limma lmfit model.matrix differential gene expression
6.8 years ago stinehedensted • 0
2
votes
5
replies
2.4k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma contrast missing data lmfit makecontrasts
updated 6.8 years ago by 51k • written 6.9 years ago by ▴ 10
0
votes
3
replies
1.2k
views
Get back to individual measures to calculate coefficients like the lmFit fucntion (limma package)
limma lmfit weight individual
7.3 years ago stephane.cauchi ▴ 10
0
votes
2
replies
1.3k
views
Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 7.6 years ago by 51k • written 7.6 years ago by ▴ 10
4
votes
8
replies
1.9k
views
Limma for paired and unpaired analysis with adjustment for categorical and continuous variables
limma illumina450k lmfit
updated 7.6 years ago by ★ 7.9k • written 7.6 years ago by • 0
2
votes
4
replies
1.6k
views
Problem with Agilent microarray data analysis using limma package
limma agilent microarrays lmfit
updated 8.0 years ago by 51k • written 8.0 years ago by • 0
2
votes
5
replies
4.3k
views
Analysis using a linear model
lmfit
updated 8.6 years ago by 51k • written 8.6 years ago by • 0
3
votes
6
replies
2.5k
views
How to get a list of differentialy expressed genes with data from Illumina array?
limma illumina microarray lmfit differential gene expression
updated 8.9 years ago by 66k • written 8.9 years ago by ▴ 10
2
votes
2
replies
2.4k
views
limma: Using log2 fold changes as input for a linear model fit
limma logfc lmfit
updated 9.1 years ago by ★ 28k • written 9.1 years ago by ▴ 10
2
votes
8
replies
2.2k
views
lmFit only deals with numerical values (data matrix object)?
limma lmFit
updated 9.5 years ago by 51k • written 13.2 years ago by ▴ 210
4
votes
3
replies
4.8k
views
p-values from robust linear model in LIMMA
limma lmFit
updated 9.5 years ago by 51k • written 10.1 years ago by ▴ 40
21 results • Page 1 of 1
Recent ...
Replies
Answer: Create a Graph w/ Only the Genes Interaction by Antonio • 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results by alserg ▴ 260
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results by alserg ▴ 260
Where did you see ranking of genes by log2FC * (-log10 p-value)? I don't think I ever saw one and not sure what it should achieve. Aren't y…
Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Answer: LRT test for different timepoints (one tissue types vs. many tissue types) by Michael Love 42k
No, this is a contrast of estimated coefficient (e.g. the Wald test).
Votes
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Awards • All
Popular Question to ATpoint ★ 4.2k
Popular Question to WouterDeCoster ▴ 130
Scholar to Gordon Smyth 51k
Voter to Chris ▴ 20
Popular Question to Jitendra ▴ 10
Locations • All
United States, 1 minute ago
St Louis, MO, 2 minutes ago
United States, 3 minutes ago
China, 8 minutes ago
United States, 8 minutes ago
Traffic: 1385 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6