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lme4
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6
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2.8k
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limma vs lme4: definition of "random effects"
limma
lme4
mixed
20 months ago
leandro
• 0
3
votes
8
replies
1.6k
views
Results from variancePartition not matching those from lme4
variancepartition
lme4
mixedmodel
updated 4.8 years ago by
gabriel.hoffman
▴ 130 • written 4.9 years ago by
c.taylor
• 0
4
votes
2
replies
958
views
Two-way interaction, linear redundancy
limma
caret
lm
lmer
lme4
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
Sindre
▴ 110
0
votes
5
replies
948
views
selecting the right package for complex designs
limma
edger
lme4
updated 7.4 years ago by
Aaron Lun
★ 28k • written 7.4 years ago by
bensimon.ariel
• 0
12
votes
2
replies
3.6k
views
How does edgeR compare to lme4?
rna-seq
edger
mixed model
random effects
lme4
updated 8.0 years ago by
Gordon Smyth
51k • written 8.0 years ago by
Ekarl2
▴ 80
0
votes
6
replies
3.3k
views
Analyzing pre/post (longitudinal) data using limma/lme4 with adjustment for continuous covariates
illumina450k
limma
lme4
lmer
updated 8.2 years ago by
Aaron Lun
★ 28k • written 8.2 years ago by
DSP
• 0
6 results • Page
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Comment: limma comparison for small sample size and how to get covariance matrix
by
Gordon Smyth
51k
Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Votes
Problems to install a package - Ubuntu
BiocCheck incorrectly reports I'm not registered on this site
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
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