Showing : lmFit • reset
2
votes
4
replies
757
views
how limma work with continous variables
GordonSmyth limmaGUI lmFit voom
updated 6 months ago by 52k • written 6 months ago by ▴ 40
1
vote
1
reply
1.2k
views
Limma for paired and unpaired samples. Strange number of DEGs in unpaired samples
limma lmfit R DifferentialExpression
updated 2.7 years ago by ★ 4.6k • written 2.7 years ago by • 0
2
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3
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1.7k
views
lmFit, continuous exposure, adjustment covariates
lmFit
updated 2.7 years ago by 52k • written 3.6 years ago by • 0
0
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0
replies
976
views
Incorporating limma duplicateCorrelation() function into minfi dmpFinder() for a mixed model approach
minfi limma lmm lmfit dmpFinder
3.7 years ago kyleyxw • 0
3
votes
4
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1.4k
views
lmFit, number of proteins
lmFit
3.8 years ago • updated 3.6 years ago AyHi • 0
1
vote
5
replies
2.1k
views
Limma for proteomic data! Please Help!
limma voom lmfit ebayesfit
updated 4.8 years ago by 52k • written 4.8 years ago by • 0
4
votes
6
replies
967
views
mean log2CPM after model fit (lmFit)
limma lmFit mean expression level
updated 4.9 years ago by 68k • written 4.9 years ago by • 0
2
votes
2
replies
1.2k
views
design matrix and correlate variable
limma lmfit
updated 5.8 years ago by ★ 28k • written 5.8 years ago by ▴ 10
2
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2
replies
1.3k
views
Different results from limma depending on whether or not I have an intercept term in my model
limma lmfit voom limma design matrix voomwithqualityweights
updated 6.1 years ago by 52k • written 6.1 years ago by ▴ 10
1
vote
8
replies
2.0k
views
Design matrix for regressing gene expression on a continuous variable - age
limma lmfit design matrix r
updated 6.6 years ago by ★ 28k • written 6.6 years ago by • 0
1
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7
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2.0k
views
model.matrix from GDS data
model.matrix lmFit eBayes GEOquery limma
7.0 years ago darthratus • 0
2
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3
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2.1k
views
Differential expression of nomalised and log2 transformed data in limma
limma lmfit model.matrix differential gene expression
7.4 years ago stinehedensted • 0
2
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5
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2.7k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma contrast missing data lmfit makecontrasts
updated 7.4 years ago by 52k • written 7.5 years ago by ▴ 10
0
votes
3
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1.4k
views
Get back to individual measures to calculate coefficients like the lmFit fucntion (limma package)
limma lmfit weight individual
7.9 years ago stephane.cauchi ▴ 10
0
votes
2
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1.5k
views
Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 8.2 years ago by 52k • written 8.3 years ago by ▴ 10
4
votes
8
replies
2.1k
views
Limma for paired and unpaired analysis with adjustment for categorical and continuous variables
limma illumina450k lmfit
updated 8.2 years ago by ★ 7.9k • written 8.3 years ago by • 0
2
votes
4
replies
1.8k
views
Problem with Agilent microarray data analysis using limma package
limma agilent microarrays lmfit
updated 8.6 years ago by 52k • written 8.6 years ago by • 0
2
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5
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5.1k
views
Analysis using a linear model
lmfit
updated 9.2 years ago by 52k • written 9.2 years ago by • 0
3
votes
6
replies
2.8k
views
How to get a list of differentialy expressed genes with data from Illumina array?
limma illumina microarray lmfit differential gene expression
updated 9.5 years ago by 68k • written 9.5 years ago by ▴ 10
2
votes
2
replies
2.7k
views
limma: Using log2 fold changes as input for a linear model fit
limma logfc lmfit
updated 9.7 years ago by ★ 28k • written 9.7 years ago by ▴ 10
2
votes
8
replies
2.6k
views
lmFit only deals with numerical values (data matrix object)?
limma lmFit
updated 10.1 years ago by 52k • written 13.9 years ago by ▴ 210
4
votes
3
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5.2k
views
p-values from robust linear model in LIMMA
limma lmFit
updated 10.1 years ago by 52k • written 10.7 years ago by ▴ 40
22 results • Page 1 of 1
Recent ...
Replies
Comment: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by Blair • 0
@[Sprunki][1] wrote: Please read the vignette and think about adhering to the author's best practice, which discusses batch impacts. [1…
Comment: error in ChAMP loading file by 81becky • 0
hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…
Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Votes
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
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Popular Question to Vincent J. Carey, Jr. 6.7k
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