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R quantile list

20 months ago sat • 0

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list save dataframe

updated 2.4 years ago by shepherl 4.1k • written 2.4 years ago by orticello.1160797 ▴ 10

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TCGA tcgabiolinks list reformat

6.8 years ago Guido Hooiveld ★ 4.1k

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dnastringset list stringset

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by vinod.acear ▴ 50

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r iranges findoverlaps IntegerList List

8.2 years ago • updated 8.0 years ago jian_liangli • 0

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coercion data manipulation s4vectors List

8.3 years ago Jurat Shahidin ▴ 80

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deseq2 heatmap clustering file list

updated 9.1 years ago by Michael Love 42k • written 9.1 years ago by chariko • 0

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org.mm.eg.db select list

updated 9.1 years ago by James W. MacDonald 67k • written 9.1 years ago by Assa Yeroslaviz ★ 1.5k

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mirror preferred list

updated 9.5 years ago by Dan Tenenbaum ★ 8.2k • written 9.5 years ago by lejeczek ▴ 10

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Piano List

updated 9.6 years ago by Leif Väremo ▴ 70 • written 9.6 years ago by nonCodingGene ▴ 10

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rle list irange grangeslist

updated 9.6 years ago by Chris Seidel ▴ 80 • written 9.6 years ago by gen ▴ 30

11 results • Page 1 of 1

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Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0

> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…

Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0

Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…

Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k

I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …

Votes

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Awards • All

Supporter to Paul Harrison ▴ 100

Popular Question to Mikhail Dozmorov ▴ 30