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list
•
reset
0
votes
4
replies
1.6k
views
how to extract list in quantile in R
R
quantile
list
2.1 years ago
sat
• 0
1
vote
0
replies
2.6k
views
stuck on unimplemented type 'list' in 'EncodeElement'
list
save
dataframe
updated 2.8 years ago by
shepherl
4.1k • written 2.9 years ago by
orticello.1160797
▴ 10
0
votes
4
replies
1.9k
views
how to reformat complex list object (derived with TCGAbiolinks)?
TCGA
tcgabiolinks
list
reformat
7.3 years ago
Guido Hooiveld
★ 4.1k
3
votes
4
replies
4.2k
views
How to convert a DnaStringSet object to list of seq?
dnastringset
list
stringset
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
vinod.acear
▴ 50
1
vote
12
replies
2.7k
views
How can I integrate set of compressedList in multiple list into one without duplication?
r
iranges
findoverlaps
IntegerList
List
8.7 years ago • updated 8.5 years ago
jian_liangli
• 0
3
votes
5
replies
2.1k
views
How can I coerce "list" to S4 "List" (reproducible example is available)?
coercion
data manipulation
s4vectors
List
8.8 years ago
Jurat Shahidin
▴ 80
2
votes
3
replies
4.7k
views
Deseq2. Cluster of an specific list
deseq2
heatmap
clustering
file
list
updated 9.6 years ago by
Michael Love
43k • written 9.6 years ago by
chariko
• 0
4
votes
2
replies
4.1k
views
select keys from org.Mm.eg.db
org.mm.eg.db
select
list
updated 9.6 years ago by
James W. MacDonald
68k • written 9.6 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.3k
views
preferred mirrors list - permanently
mirror
preferred
list
updated 9.9 years ago by
Dan Tenenbaum
★ 8.2k • written 9.9 years ago by
lejeczek
▴ 10
0
votes
1
reply
1.4k
views
Mixing list from Piano package output
Piano
List
updated 10.0 years ago by
Leif Väremo
▴ 70 • written 10.0 years ago by
nonCodingGene
▴ 10
2
votes
4
replies
2.3k
views
summing integer RLE
rle
list
irange
grangeslist
updated 10.1 years ago by
Chris Seidel
▴ 80 • written 10.1 years ago by
gen
▴ 30
11 results • Page
1 of 1
Recent ...
Replies
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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