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R quantile list

23 months ago sat • 0

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list save dataframe

updated 2.7 years ago by shepherl 4.1k • written 2.7 years ago by orticello.1160797 ▴ 10

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1.8k

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TCGA tcgabiolinks list reformat

7.1 years ago Guido Hooiveld ★ 4.1k

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dnastringset list stringset

updated 7.7 years ago by Martin Morgan 25k • written 7.7 years ago by vinod.acear ▴ 50

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r iranges findoverlaps IntegerList List

8.5 years ago • updated 8.3 years ago jian_liangli • 0

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coercion data manipulation s4vectors List

8.6 years ago Jurat Shahidin ▴ 80

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deseq2 heatmap clustering file list

updated 9.4 years ago by Michael Love 43k • written 9.4 years ago by chariko • 0

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org.mm.eg.db select list

updated 9.4 years ago by James W. MacDonald 68k • written 9.4 years ago by Assa Yeroslaviz ★ 1.5k

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mirror preferred list

updated 9.8 years ago by Dan Tenenbaum ★ 8.2k • written 9.8 years ago by lejeczek ▴ 10

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Piano List

updated 9.8 years ago by Leif Väremo ▴ 70 • written 9.9 years ago by nonCodingGene ▴ 10

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2.2k

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rle list irange grangeslist

updated 9.9 years ago by Chris Seidel ▴ 80 • written 9.9 years ago by gen ▴ 30

11 results • Page 1 of 1

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Answer: WGCNA with paired samples by Ivo • 0

You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …

Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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