Bioconductor Linear models

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deseq2 design matrix multi-confounders linear models rna-seq

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by mohamedrefaat.1.1992 • 0

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1.5k

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methylation ComBat Linear models batch correction AIC

updated 5.4 years ago by Kevin Blighe ★ 4.0k • written 5.4 years ago by lucasmiranda42 • 0

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1.6k

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Limma R Linear Models

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by christiangriffioen • 0

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ballgown linear models

7.1 years ago Yong Li ▴ 50

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microarray SVA ComBat Linear models Residuals

7.7 years ago DataFanatic ▴ 10

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Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0

[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…

Comment: Filtering after DESeq by caroline.zanchi • 0

I am going to try this right now, thanks !

Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0

This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/

Comment: Filtering after DESeq by ATpoint ★ 4.8k

The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …

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A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

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