Bioconductor LfcThreshold

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DESeq2 lfcThreshold

2.2 years ago Abir.khazaal ▴ 10

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lfcshrink DESeq2 RNASeq lfcthreshold

2.4 years ago ClaudiaE • 0

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ashr Deseq2 lfcThreshold

updated 3.1 years ago by Michael Love 42k • written 4.6 years ago by Iryna • 0

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deseq2 differential expression logfoldchange lfcshrink lfcthreshold

updated 3.5 years ago by Michael Love 42k • written 6.4 years ago by emi.sch ▴ 40

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deseq2 lfcshrink lfcthreshold differential gene expression

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by corentinrichard374369 • 0

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DESeq2 lfcThreshold

updated 6.7 years ago by Michael Love 42k • written 6.7 years ago by Mike ▴ 10

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lfcthreshold deseq2

updated 6.9 years ago by Michael Love 42k • written 6.9 years ago by lirongrossmann ▴ 80

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deseq2 microrna lfcThreshold stable expression ffpe

updated 9.1 years ago by Michael Love 42k • written 9.1 years ago by mariakarand ▴ 20

8 results • Page 1 of 1

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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

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Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

Awards • All

Scholar to Haibo Liu ▴ 20