Bioconductor Lfc

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1.9k

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deseq2 LFC LRT

written 6.0 years ago by sally.badawi • 0

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1.0k

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GLM prior DESeq LFC

updated 2.6 years ago by Michael Love 43k • written 2.6 years ago by stew • 0

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1.4k

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RNAseq LFC DEseq

3.7 years ago ayy2110 • 0

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2.0k

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deseq2 lfc betaprior

updated 2.3 years ago by Michael Love 43k • written 6.2 years ago by Mariaxi • 0

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15k

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deseq2 lfc coef contrast

updated 7.5 years ago by Michael Love 43k • written 7.5 years ago by Anke Busch ▴ 10

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3.1k

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limma microarray DEGs p values lfc

7.6 years ago rkp • 0

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20k

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deseq2 deseq lfc lfcse standard error

updated 7.8 years ago by rraadd_8 • 0 • written 7.9 years ago by tootiki • 0

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2.6k

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microarray limma multiple treatments lfc

updated 8.7 years ago by Aaron Lun ★ 28k • written 8.7 years ago by brionyk9 • 0

8 results • Page 1 of 1

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Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

Votes

Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k