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lfc
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7
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1.5k
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LRT test followed by filtering based on LFC
deseq2
LFC
LRT
written 5.4 years ago by
sally.badawi
• 0
1
vote
1
reply
828
views
Gene wise dispersion estimate Process - From the prior to the posterior
GLM
prior
DESeq
LFC
updated 2.0 years ago by
Michael Love
42k • written 2.1 years ago by
stew
• 0
0
votes
1
reply
1.2k
views
Filtering DESeq2 results for | LFC | > 1 genes
RNAseq
LFC
DEseq
3.1 years ago
ayy2110
• 0
0
votes
6
replies
1.6k
views
large range of LFC in DESeq2
deseq2
lfc
betaprior
updated 20 months ago by
Michael Love
42k • written 5.6 years ago by
Mariaxi
• 0
17
votes
7
replies
13k
views
DESeq2 lfcShrink() usage of coef vs. usage of contrast
deseq2
lfc
coef
contrast
updated 6.9 years ago by
Michael Love
42k • written 6.9 years ago by
Anke Busch
▴ 10
6
votes
4
replies
2.8k
views
Identification of DEGs through limma analysis
limma
microarray
DEGs
p values
lfc
7.0 years ago
rkp
• 0
4
votes
14
replies
18k
views
standard error value (lfcSE) returned by DeSeq2
deseq2
deseq
lfc
lfcse
standard error
updated 7.2 years ago by
rraadd_8
• 0 • written 7.3 years ago by
tootiki
• 0
2
votes
1
reply
2.3k
views
Using Limma to identify any differences between multiple treatment groups (without making pairwise comparisons)
microarray
limma
multiple treatments
lfc
updated 8.1 years ago by
Aaron Lun
★ 28k • written 8.1 years ago by
brionyk9
• 0
8 results • Page
1 of 1
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Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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