Showing : keggrest • reset
4
votes
2
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669
views
Cannabis and KEGGgraph
KEGGREST GenomicDistributionsData KEGGgraph KEGG
updated 11 months ago by ★ 4.1k • written 12 months ago by ▴ 30
0
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0
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669
views
Include or exclude N/A genes (those without any KEGG annotation) when running Wilcox test?
KEGGREST KEGG RNASeq
17 months ago mch • 0
1
vote
1
reply
2.7k
views
Error with Pathview: Bad Request (HTTP 400)
KEGGREST pathview R
updated 2.0 years ago by ★ 4.1k • written 2.0 years ago by ▴ 10
0
votes
2
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2.3k
views
keggList curl::curl_fetch_memory(url, handle = handle) ERROR
URL KEGGREST
2.1 years ago jonathanlecoy • 0
3
votes
13
replies
3.6k
views
pathview says my nonmodel species is unknown: "species invalid"
KEGGREST KEGG gage pathview
2.7 years ago • updated 2.2 years ago nute11a ▴ 10
0
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3
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1.4k
views
ROntoTools: Set returned by keggPathwayGraphs is missing 121 pathways reported by keggPathwayNames
KEGGREST ROntoTools KEGG KEGGgraph
2.7 years ago abf ▴ 30
0
votes
3
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2.8k
views
Problem in kegga() and others getting data from KEGG after switch from http to https
limma KEGGREST EGSEA
updated 2.8 years ago by 4.1k • written 2.8 years ago by ★ 2.0k
0
votes
0
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1.4k
views
How to compute the "completeness" of a KEGG module using a set of KEGG orthologs? (Module Completion Ratio)
KEGG KEGGREST keggorthology Metagenomics
4.1 years ago jol.espinoz ▴ 40
2
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1
reply
1.2k
views
GSEA generate genesets
pathway KEGGREST GSEA
updated 4.1 years ago by ★ 4.0k • written 4.1 years ago by • 0
0
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1
reply
2.4k
views
KEGGREST keggGet fails to retrieve modules, but not pathways
keggrest software error pathways modules kegg
updated 5.0 years ago by 25k • written 5.0 years ago by • 0
0
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2
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1.1k
views
how can I find a pathway
kegg KEGGREST
5.4 years ago Bioinformatics ▴ 30
1
vote
8
replies
2.4k
views
KEGGREST mapping between genes and pathways
keggrest mapping genes to pathways
updated 6.2 years ago by 52k • written 6.2 years ago by ▴ 10
3
votes
4
replies
12k
views
How i can get a list of KEGG pathways and its list of genes?
keggrest
updated 6.8 years ago by 25k • written 6.9 years ago by ▴ 10
0
votes
1
reply
1.0k
views
KEGGSOAP:: KEGGxmlns object not found
keggsoap keggrest
6.9 years ago doctor.dee005 • 0
1
vote
9
replies
3.6k
views
Gene-Metabolite and Metabolite-Pathway network from KEGG with KEGGREST
KEGG keggrest
updated 7.0 years ago by ▴ 10 • written 7.0 years ago by ▴ 20
1
vote
4
replies
2.6k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest chemminer fmcsr graph
written 7.1 years ago by • 0
2
votes
1
reply
1.2k
views
How can I remove the ellipsis and get the complete sequence and results?
keggrest biostrings
updated 7.2 years ago by 4.1k • written 7.2 years ago by ▴ 10
2
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1
reply
1.7k
views
Possible bug: outdated result from listDatabases()
KEGGREST bug
updated 7.7 years ago by ▴ 50 • written 7.7 years ago by • 0
0
votes
2
replies
3.4k
views
Accessing KEGG (errors w/ KEGGREST)
KEGG keggrest
updated 8.2 years ago by 52k • written 8.2 years ago by • 0
0
votes
2
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1.5k
views
Retrieve KEGG from protein GI
R KEGG KEGGREST
8.3 years ago felipelira3 • 0
0
votes
2
replies
3.7k
views
Get the reactions for a organism using KEGGREST
keggrest
8.9 years ago kjboteroo • 0
0
votes
11
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5.5k
views
Examples from keggList in KEGGREST don't all work
software error keggrest
9.1 years ago Bryan Hanson • 0
0
votes
1
reply
1.9k
views
Problem in KEGGREST package function keggConv
KEGGREST keggConv
updated 9.2 years ago by ★ 8.2k • written 9.2 years ago by ▴ 120
2
votes
15
replies
4.7k
views
Timeout error in kegga() using edgeR
edger kegga keggrest
9.3 years ago Likai Mao ▴ 40
1
vote
1
reply
1.7k
views
KEGGREST fail to fetch human genes link to pathway
keggrest clusterProfiler
updated 9.6 years ago by ★ 8.2k • written 9.7 years ago by ★ 1.2k
0
votes
2
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8.6k
views
Using Keggrest to convert ncbi gene IDs to kegg orthology and pathway
keggrest kegg keggorthology
updated 10.4 years ago by 68k • written 10.4 years ago by ▴ 100
0
votes
4
replies
3.3k
views
Error: could not find function "plotPCA"
GO affycoretools KEGGREST GO affycoretools KEGGREST
updated 10.9 years ago by 43k • written 10.9 years ago by ▴ 50
0
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1
reply
1.7k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 11.3 years ago by 68k • written 11.3 years ago by ★ 13k
0
votes
1
reply
1.7k
views
Error message using arrayweights
GO Cancer mouse4302 KEGGREST GO Cancer mouse4302 KEGGREST
updated 11.3 years ago by ▴ 1000 • written 11.3 years ago by ▴ 80
0
votes
0
replies
1.9k
views
Pathview question
KEGGREST pathview KEGGREST pathview
11.6 years ago Luo Weijun ★ 1.6k
0
votes
1
reply
2.1k
views
trouble reading DNA stringset from keggGet function
PROcess KEGGREST PROcess KEGGREST
updated 11.6 years ago by 68k • written 11.6 years ago by ★ 13k
0
votes
7
replies
5.2k
views
Simple pathway enrichment analysis for gene lists
Microarray Category gage KEGGREST ROntoTools Microarray Category gage KEGGREST ROntoTools
updated 11.6 years ago by ▴ 470 • written 11.6 years ago by ▴ 680
0
votes
0
replies
1.9k
views
SPIA algorithm organisms not included already in the SPIA package
Organism SPIA goseq KEGGREST Organism SPIA goseq KEGGREST
12.1 years ago Tarca, Adi ▴ 570
0
votes
0
replies
1.3k
views
KEGGREST package is available in devel
KEGGSOAP KEGGREST KEGGSOAP KEGGREST
12.3 years ago Dan Tenenbaum ★ 8.2k
34 results • Page 1 of 1
Recent ...
Replies
Answer: Version conflict when pushing to scQTLtools devel branch by shepherl 4.1k
There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…
Comment: DiffBind can't find a DAR by Mengjun • 0
The details about this question: I have 4 samples with 2 conditions( ctrl_1, ctrl_2, ko_1, ko_2), i use these 4 samples as input. Here is …
Comment: DiffBind can't find a DAR by Mengjun • 0
Thank you very much for pointing out this shortcoming. I will improve it.
Comment: samtools loading in R by Charlie • 0
This is obviously a very late answer but I had a similar error: > sh: samtools: command not found > > sh: samtools: command not found > …
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by njmcdirect • 0
https://www.www-njmcdirect.run/
Votes
DiffBind - question on the use of filtered or unfiltered input data
Answer: Enhanced Volcano Error when drawing connectors
Answer: Origin of the labels for the SingleCellMultiModal dataset
Answer: PhD scholar
Answer: how to use `arrayWeightsQuick()`?
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