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karyoploter
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txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome
TxDb.Mmusculus.UCSC.mm10.ensGene
TxDb
karyoploteR
5 months ago
remi-xavier.coux
▴ 10
1
vote
0
replies
773
views
Make custom Txdb class objects from Txdb
GenomicFeatures
karyoploteR
TxDb.Hsapiens.UCSC.hg19.knownGene
2.0 years ago
Shreyash
▴ 10
9
votes
5
replies
2.0k
views
karyoploteR genome coverage plotting using BSgenome.TAIR10
BSgenome.Athaliana.TAIR.TAIR10.
karyoploteR
BSgenome
updated 2.6 years ago by
James W. MacDonald
68k • written 2.6 years ago by
rtt100
• 0
0
votes
1
reply
1.1k
views
KaryoploteR: error using galGal6 genome
KaryoploteR
updated 4.7 years ago by
Kevin Blighe
★ 4.0k • written 4.7 years ago by
mpigozzi
• 0
4
votes
5
replies
3.8k
views
How to add a color legend to plotKaryotype and kpPlotRegions ?
karyoploter
updated 5.7 years ago by
bernatgel
▴ 150 • written 5.7 years ago by
Aditya
▴ 160
0
votes
1
reply
1.4k
views
Bioconductor - Karyoploter | Visualization | Multiple Chromosome display issue
karyoploteR
updated 6.0 years ago by
bernatgel
▴ 150 • written 6.0 years ago by
saeed Ur Rehman
• 0
0
votes
1
reply
2.3k
views
How to name the custom genome in karyoploteR ?
software error
R
bsgenome
karyoploter
updated 7.5 years ago by
bernatgel
▴ 150 • written 7.5 years ago by
kirannbishwa01
▴ 20
1
vote
2
replies
1.5k
views
KaryoploteR does not work on R.3.3.3
karyoploter
updated 7.6 years ago by
bgel
▴ 10 • written 7.6 years ago by
spr
▴ 10
0
votes
0
replies
1.1k
views
karyoploteR: custom genome axis $latest.plot
KaryoploteR
7.8 years ago
Radek
▴ 90
9 results • Page
1 of 1
Recent ...
Replies
Comment: Intepretation of results
by
Tom
• 0
[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…
Comment: Gene Ontology (GO) Analysis
by
Tom
• 0
[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…
Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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