Bioconductor Karyoploter

Showing : karyoploter • reset

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419

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TxDb.Mmusculus.UCSC.mm10.ensGene TxDb karyoploteR

4 months ago remi-xavier.coux ▴ 10

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760

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

23 months ago Shreyash ▴ 10

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2.0k

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 2.5 years ago by James W. MacDonald 68k • written 2.5 years ago by rtt100 • 0

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1.1k

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KaryoploteR

updated 4.6 years ago by Kevin Blighe ★ 4.0k • written 4.6 years ago by mpigozzi • 0

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3.7k

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karyoploter

updated 5.6 years ago by bernatgel ▴ 150 • written 5.6 years ago by Aditya ▴ 160

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1.3k

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karyoploteR

updated 6.0 years ago by bernatgel ▴ 150 • written 6.0 years ago by saeed Ur Rehman • 0

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2.2k

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software error R bsgenome karyoploter

updated 7.4 years ago by bernatgel ▴ 150 • written 7.4 years ago by kirannbishwa01 ▴ 20

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1.5k

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karyoploter

updated 7.5 years ago by bgel ▴ 10 • written 7.6 years ago by spr ▴ 10

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1.1k

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KaryoploteR

7.7 years ago Radek ▴ 90

9 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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