Bioconductor KaryoploteR

Showing : karyoploteR • reset

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372

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TxDb.Mmusculus.UCSC.mm10.ensGene TxDb karyoploteR

12 weeks ago remi-xavier.coux ▴ 10

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722

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

22 months ago Shreyash ▴ 10

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2.0k

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 2.4 years ago by James W. MacDonald 68k • written 2.4 years ago by rtt100 • 0

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1.1k

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KaryoploteR

updated 4.5 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by mpigozzi • 0

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3.6k

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karyoploter

updated 5.5 years ago by bernatgel ▴ 150 • written 5.5 years ago by Aditya ▴ 160

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1.2k

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karyoploteR

updated 5.8 years ago by bernatgel ▴ 150 • written 5.8 years ago by saeed Ur Rehman • 0

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2.2k

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software error R bsgenome karyoploter

updated 7.3 years ago by bernatgel ▴ 150 • written 7.3 years ago by kirannbishwa01 ▴ 20

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1.5k

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karyoploter

updated 7.4 years ago by bgel ▴ 10 • written 7.4 years ago by spr ▴ 10

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1.1k

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KaryoploteR

7.6 years ago Radek ▴ 90

9 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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