Bioconductor KaryoploteR

Showing : karyoploteR • reset

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448

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TxDb.Mmusculus.UCSC.mm10.ensGene TxDb karyoploteR

4 months ago remi-xavier.coux ▴ 10

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772

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

2.0 years ago Shreyash ▴ 10

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2.0k

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 2.6 years ago by James W. MacDonald 68k • written 2.6 years ago by rtt100 • 0

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1.1k

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KaryoploteR

updated 4.7 years ago by Kevin Blighe ★ 4.0k • written 4.7 years ago by mpigozzi • 0

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3.8k

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karyoploter

updated 5.6 years ago by bernatgel ▴ 150 • written 5.6 years ago by Aditya ▴ 160

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1.4k

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karyoploteR

updated 6.0 years ago by bernatgel ▴ 150 • written 6.0 years ago by saeed Ur Rehman • 0

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2.3k

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software error R bsgenome karyoploter

updated 7.5 years ago by bernatgel ▴ 150 • written 7.5 years ago by kirannbishwa01 ▴ 20

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1.5k

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karyoploter

updated 7.6 years ago by bgel ▴ 10 • written 7.6 years ago by spr ▴ 10

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1.1k

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KaryoploteR

7.8 years ago Radek ▴ 90

9 results • Page 1 of 1

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Comment: Differing results with DESeq2 by JKim • 0

My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…

Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k

This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…

Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80

Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…

Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Votes

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

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