Bioconductor KaryoploteR

Showing : karyoploteR • reset

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300

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TxDb.Mmusculus.UCSC.mm10.ensGene TxDb karyoploteR

25 days ago • updated 24 days ago remi-xavier.coux ▴ 10

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663

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

20 months ago Shreyash ▴ 10

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1.8k

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 2.2 years ago by James W. MacDonald 67k • written 2.2 years ago by rtt100 • 0

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1.0k

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KaryoploteR

updated 4.3 years ago by Kevin Blighe ★ 4.0k • written 4.3 years ago by mpigozzi • 0

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3.5k

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karyoploter

updated 5.3 years ago by bernatgel ▴ 150 • written 5.3 years ago by Aditya ▴ 160

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1.1k

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karyoploteR

updated 5.7 years ago by bernatgel ▴ 150 • written 5.7 years ago by saeed Ur Rehman • 0

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2.1k

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software error R bsgenome karyoploter

updated 7.1 years ago by bernatgel ▴ 150 • written 7.1 years ago by kirannbishwa01 ▴ 20

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1.4k

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karyoploter

updated 7.3 years ago by bgel ▴ 10 • written 7.3 years ago by spr ▴ 10

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1.1k

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KaryoploteR

7.4 years ago Radek ▴ 90

9 results • Page 1 of 1

Recent ...

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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