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isoform
•
reset
6
votes
10
replies
2.7k
views
What type of counts data to import for performing Isoform analysis in edgeR
limma
isoform
edgeR
salmon
R
updated 3 months ago by
ATpoint
★ 4.7k • written 3 months ago by
mohammedtoufiq91
▴ 10
0
votes
0
replies
563
views
IsoformSwitchAnalyzer
Isoform
IsoformSwitchAnalyzeR
22 months ago
Craig
• 0
0
votes
2
replies
874
views
Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio
isoform
written 2.3 years ago by
lhaiyan3
• 0
0
votes
5
replies
2.9k
views
Can Differential Isoform expression analysis can be performed using DESeq2 package
RNASeqData
isoform
DESeq2
2.9 years ago • updated 2.8 years ago
priyanka.m
• 0
0
votes
0
replies
1.7k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform
RNA-seq
hisat2
stringtie
ballgown
4.4 years ago
ra711
• 0
0
votes
5
replies
1.7k
views
isoform data, deep sequencing and voom
isoform
deep sequencing
voom
updated 4.6 years ago by
Gordon Smyth
52k • written 4.6 years ago by
Ina Hoeschele
▴ 620
0
votes
4
replies
1.4k
views
mean-variance trend plots with isoform and gene-level data from tximport
tximport
isoform
voom
updated 4.7 years ago by
Gordon Smyth
52k • written 4.7 years ago by
Ina Hoeschele
▴ 620
1
vote
4
replies
1.6k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer
Isoform
limma
IsoformSwitchAnalyzeR
updated 5.4 years ago by
k.vitting.seerup
▴ 120 • written 5.4 years ago by
asmita
• 0
1
vote
4
replies
1.4k
views
gene Isoforms quantification using RNA-seq data
gene
isoform
quantification
rna-seq
updated 5.5 years ago by
swbarnes2
★ 1.4k • written 5.5 years ago by
angel.campos
• 0
1
vote
5
replies
1.6k
views
Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
isoformswitchanalyzer
isoform
differential isoform usage
written 6.3 years ago by
A
▴ 40
0
votes
0
replies
1.2k
views
IsoformSwitchAnalyzeR error input
kallisto
differential isoform usage
isoform
7.4 years ago
ilyco
• 0
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Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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