Bioconductor Isoform

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2.9k

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limma isoform edgeR salmon R

updated 4 months ago by ATpoint ★ 4.8k • written 5 months ago by mohammedtoufiq91 ▴ 10

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596

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Isoform IsoformSwitchAnalyzeR

23 months ago Craig • 0

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923

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pacbio isoform

written 2.4 years ago by lhaiyan3 • 0

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3.0k

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RNASeqData isoform DESeq2

3.0 years ago • updated 2.9 years ago priyanka.m • 0

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1.8k

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isoform RNA-seq hisat2 stringtie ballgown

4.6 years ago ra711 • 0

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1.8k

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isoform deep sequencing voom

updated 4.7 years ago by Gordon Smyth 52k • written 4.7 years ago by Ina Hoeschele ▴ 620

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1.5k

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tximport isoform voom

updated 4.8 years ago by Gordon Smyth 52k • written 4.8 years ago by Ina Hoeschele ▴ 620

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1.7k

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 5.6 years ago by k.vitting.seerup ▴ 120 • written 5.6 years ago by asmita • 0

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1.4k

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gene isoform quantification rna-seq

updated 5.7 years ago by swbarnes2 ★ 1.4k • written 5.7 years ago by angel.campos • 0

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1.6k

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isoformswitchanalyzer isoform differential isoform usage

written 6.4 years ago by A ▴ 60

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1.2k

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kallisto differential isoform usage isoform

7.5 years ago ilyco • 0

11 results • Page 1 of 1

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Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Votes

Answer: CluserProfiler message "No gene can be mapped"

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

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