Bioconductor Isoform

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2.6k

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limma isoform edgeR salmon R

updated 6 weeks ago by ATpoint ★ 4.6k • written 7 weeks ago by mohammedtoufiq91 ▴ 10

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524

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Isoform IsoformSwitchAnalyzeR

20 months ago Craig • 0

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819

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pacbio isoform

written 2.1 years ago by lhaiyan3 • 0

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2.8k

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RNASeqData isoform DESeq2

2.8 years ago • updated 2.7 years ago priyanka.m • 0

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1.6k

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isoform RNA-seq hisat2 stringtie ballgown

4.3 years ago ra711 • 0

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1.6k

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isoform deep sequencing voom

updated 4.5 years ago by Gordon Smyth 52k • written 4.5 years ago by Ina Hoeschele ▴ 620

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1.3k

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tximport isoform voom

updated 4.5 years ago by Gordon Smyth 52k • written 4.5 years ago by Ina Hoeschele ▴ 620

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1.5k

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 5.3 years ago by k.vitting.seerup ▴ 120 • written 5.3 years ago by asmita • 0

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1.3k

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gene isoform quantification rna-seq

updated 5.4 years ago by swbarnes2 ★ 1.4k • written 5.4 years ago by angel.campos • 0

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1.5k

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isoformswitchanalyzer isoform differential isoform usage

written 6.1 years ago by A ▴ 40

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1.1k

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kallisto differential isoform usage isoform

7.2 years ago ilyco • 0

11 results • Page 1 of 1

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Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

Answer: SingleCellExperiment convenience function for metadata+expression? by Peter Hickey ▴ 740

Hi Sarah, `scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10

Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…

Comment: EdgeR Biological CVs by ATpoint ★ 4.6k

"Joseph" is a spam bot...

Answer: How to sort negative log2FC or FC in RNAseq for GSEA? by ATpoint ★ 4.6k

GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…

Votes

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

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