Showing : isoform • reset
6
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10
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2.6k
views
What type of counts data to import for performing Isoform analysis in edgeR
limma isoform edgeR salmon R
updated 8 weeks ago by ★ 4.6k • written 10 weeks ago by ▴ 10
0
votes
0
replies
536
views
IsoformSwitchAnalyzer
Isoform IsoformSwitchAnalyzeR
21 months ago Craig • 0
0
votes
2
replies
827
views
Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio isoform
written 2.2 years ago by • 0
0
votes
5
replies
2.8k
views
Can Differential Isoform expression analysis can be performed using DESeq2 package
RNASeqData isoform DESeq2
2.8 years ago • updated 2.7 years ago priyanka.m • 0
0
votes
0
replies
1.7k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform RNA-seq hisat2 stringtie ballgown
4.3 years ago ra711 • 0
0
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5
replies
1.6k
views
isoform data, deep sequencing and voom
isoform deep sequencing voom
updated 4.5 years ago by 52k • written 4.5 years ago by ▴ 620
0
votes
4
replies
1.4k
views
mean-variance trend plots with isoform and gene-level data from tximport
tximport isoform voom
updated 4.6 years ago by 52k • written 4.6 years ago by ▴ 620
1
vote
4
replies
1.5k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 5.3 years ago by ▴ 120 • written 5.3 years ago by • 0
1
vote
4
replies
1.4k
views
gene Isoforms quantification using RNA-seq data
gene isoform quantification rna-seq
updated 5.4 years ago by ★ 1.4k • written 5.4 years ago by • 0
1
vote
5
replies
1.5k
views
Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
isoformswitchanalyzer isoform differential isoform usage
written 6.2 years ago by ▴ 40
0
votes
0
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1.1k
views
IsoformSwitchAnalyzeR error input
kallisto differential isoform usage isoform
7.3 years ago ilyco • 0
11 results • Page 1 of 1
Recent ...
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Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0
how you did it pls explain
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by James W. MacDonald 68k
If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
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