Bioconductor Isoform

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2.8k

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limma isoform edgeR salmon R

updated 4 months ago by ATpoint ★ 4.8k • written 4 months ago by mohammedtoufiq91 ▴ 10

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577

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Isoform IsoformSwitchAnalyzeR

23 months ago Craig • 0

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902

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pacbio isoform

written 2.4 years ago by lhaiyan3 • 0

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3.0k

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RNASeqData isoform DESeq2

3.0 years ago • updated 2.9 years ago priyanka.m • 0

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1.8k

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isoform RNA-seq hisat2 stringtie ballgown

4.5 years ago ra711 • 0

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1.7k

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isoform deep sequencing voom

updated 4.7 years ago by Gordon Smyth 52k • written 4.7 years ago by Ina Hoeschele ▴ 620

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1.4k

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tximport isoform voom

updated 4.7 years ago by Gordon Smyth 52k • written 4.7 years ago by Ina Hoeschele ▴ 620

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1.6k

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 5.5 years ago by k.vitting.seerup ▴ 120 • written 5.5 years ago by asmita • 0

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1.4k

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gene isoform quantification rna-seq

updated 5.6 years ago by swbarnes2 ★ 1.4k • written 5.6 years ago by angel.campos • 0

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1.6k

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isoformswitchanalyzer isoform differential isoform usage

written 6.3 years ago by A ▴ 60

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1.2k

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kallisto differential isoform usage isoform

7.4 years ago ilyco • 0

11 results • Page 1 of 1

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Comment: BiocParallel_1.40.1.tar.gz not available by shepherl 4.1k

Thank you for your question. We are aware of the issue and are in process of resolving.

Comment: BiocParallel_1.40.1.tar.gz not available by Mike Smith ★ 6.6k

I'm not sure why the source package isn't currently available, but when you get the to question `Old packages: 'BiocParallel' Update all/so…

Answer: DNAStringSet(x, start=, end=) loses quality information by stenlana035 • 0

Perhaps the hub genes are associated with other variables that have a negative correlation with the immune score rather than the immunologi…

Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR by Gordon Smyth 52k

I don't understand your question, because there is no difference between limma or glmFit or glmQLFit in terms of spline modeling or the tes…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…

Votes

Limma outputs different results for same sample?

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

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