Bioconductor Intron

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intron BSgenome.Hsapiens.UCSC.hg38 BSgenome

updated 21 months ago by ATpoint ★ 4.8k • written 21 months ago by Lillian • 0

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deseq2 intron differential expression

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by gv ▴ 40

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deseq2 intron

updated 6.6 years ago by Malcolm Cook ★ 1.6k • written 6.6 years ago by Mthabisi Moyo ▴ 40

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intron GenomicFeatures

updated 7.4 years ago by Michael Lawrence ★ 11k • written 7.4 years ago by leonardsquall15 ▴ 10

4 results • Page 1 of 1

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Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR by Gordon Smyth 52k

I don't understand your question, because there is no difference between limma or glmFit or glmQLFit in terms of spline modeling or the tes…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…

Answer: DESeq2 - am I extracting results incorrectly? by James W. MacDonald 68k

If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…

Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k

If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…

Votes

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

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