Showing : intersect • reset
5
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2
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717
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Intersecting two big dataframe
genomicrange intersect
updated 5.1 years ago by 68k • written 5.1 years ago by ▴ 30
0
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2
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1.1k
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feel confused when identifying overlapping regions by intersect method
GenomicRanges overlaps intersect
updated 6.1 years ago by ★ 11k • written 6.1 years ago by • 0
5
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9
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12k
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subsetByOverlaps : comparing GRANGES and keeping all the information in the METACOLUMNS
granges bedtools intersect
updated 6.7 years ago by ▴ 70 • written 6.7 years ago by ▴ 670
2
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8
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6.1k
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GenomicRanges: identify overlapping regions, get intersection between each overlapping pair and add gene coordinates (start, end, strand and ids)
genomicranges overlap intersect findoverlaps
7.3 years ago Caroline Grisbach Meissner ▴ 10
0
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1
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1.1k
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intersect ranges from a GAlignment object with a GRangesList
intersect grangeslist galignment
updated 7.9 years ago by 16k • written 7.9 years ago by • 0
3
votes
5
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1.9k
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Extract coordinates of overlapping genomic intervals
genomicranges findoverlaps intersect
updated 8.7 years ago by ★ 13k • written 8.7 years ago by ▴ 110
6
votes
2
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5.3k
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How to get the intersect and get the difference of a grange object while keeping meta data
genomicranges intersect
updated 8.9 years ago by 4.1k • written 9.0 years ago by ▴ 30
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4
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3.7k
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[Solved]Preserve metadata column for retrieving common regions from two GRanges objects
granges intersect
9.1 years ago Jurat Shahidin ▴ 80
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9
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3.2k
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IRanges: reduce(), findOverlaps(), and intersect() by group
iranges findoverlaps intersect group
9.4 years ago pesquivel • 0
9 results • Page 1 of 1
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Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by donnycrimson • 0
Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …
Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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