Bioconductor Intersect

Showing : intersect • reset

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709

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genomicrange intersect

updated 5.0 years ago by James W. MacDonald 68k • written 5.0 years ago by AZ ▴ 30

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GenomicRanges overlaps intersect

updated 6.1 years ago by Michael Lawrence ★ 11k • written 6.1 years ago by fjia304 • 0

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12k

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granges bedtools intersect

updated 6.6 years ago by lee.s ▴ 70 • written 6.6 years ago by Bogdan ▴ 670

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genomicranges overlap intersect findoverlaps

7.2 years ago Caroline Grisbach Meissner ▴ 10

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intersect grangeslist galignment

updated 7.9 years ago by Hervé Pagès 16k • written 7.9 years ago by ccanchaya • 0

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genomicranges findoverlaps intersect

updated 8.7 years ago by Steve Lianoglou ★ 13k • written 8.7 years ago by rubi ▴ 110

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genomicranges intersect

updated 8.8 years ago by shepherl 4.1k • written 8.9 years ago by zlskidmore ▴ 30

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granges intersect

9.1 years ago Jurat Shahidin ▴ 80

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iranges findoverlaps intersect group

9.3 years ago pesquivel • 0

9 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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