Bioconductor Integerlist

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r iranges findoverlaps IntegerList List

8.4 years ago • updated 8.2 years ago jian_liangli • 0

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r iranges integerlist DataFrame

updated 8.2 years ago by Jurat Shahidin ▴ 80 • written 8.2 years ago by jian_liangli • 0

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r iranges integerlist

8.3 years ago Jurat Shahidin ▴ 80

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r s4vectors integerlist iranges

updated 8.3 years ago by Michael Lawrence ★ 11k • written 8.3 years ago by jian_liangli • 0

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iranges integerlist s4

8.4 years ago Jurat Shahidin ▴ 80

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s4 coercion iranges integerlist

8.4 years ago jian_liangli • 0

6 results • Page 1 of 1

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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

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Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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