Bioconductor Insilicomerging

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affy insilicomerging

5.6 years ago pratikshasharma47 • 0

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1.3k

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inSilicoMerging microarray affymetrix microarrays

updated 5.9 years ago by James W. MacDonald 67k • written 5.9 years ago by Adam_M • 0

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insilicomerging error insilicodb expressionset

7.8 years ago andreas.pittroff • 0

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MDSplot geneexpression insilicomerging

updated 8.6 years ago by James W. MacDonald 67k • written 8.6 years ago by Shamim Sarhadi ▴ 20

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2.0k

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inSilicoMerging doubleannotation affymetrix microarrays limma inSilicoDB

9.2 years ago svlachavas ▴ 830

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2.5k

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combine expresiondataset insilicomerging

9.3 years ago alakatos ▴ 130

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4.2k

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insilicomerging batcheffect limma differential gene expression bioconductor

updated 9.3 years ago by Aaron Lun ★ 28k • written 9.3 years ago by svlachavas ▴ 830

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insilicomerging

9.4 years ago carol white ▴ 680

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frma bioconductor batcheffect Primeview insilicomerging

updated 9.6 years ago by Matthew McCall ▴ 830 • written 9.6 years ago by svlachavas ▴ 830

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inSilicoMerging

10.0 years ago Li Liu ▴ 100

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1.5k

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inSilicoMerging inSilicoMerging

updated 10.5 years ago by Quentin De Clerck ▴ 10 • written 10.5 years ago by François Lefebvre ▴ 50

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2.6k

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inSilicoMerging inSilicoMerging

updated 11.3 years ago by Dan Tenenbaum ★ 8.2k • written 11.3 years ago by Li Liu ▴ 100

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Colon hgu133a2 hgu133plus2 limma inSilicoMerging Colon hgu133a2 hgu133plus2 limma

11.4 years ago Ed Siefker ▴ 230

13 results • Page 1 of 1

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Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0

Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…

Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k

I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Fahd • 0

Thanks for looking into this. This issue results in the incorrect usage of multiple ORA software including EnrichR.

Votes

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

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Supporter to Paul Harrison ▴ 100

Popular Question to Mikhail Dozmorov ▴ 30