Showing : inSilicoMerging • reset
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table (pData(eset_NONE)[,"Study"]); table(pData(eset_NONE)[,"Disease"]);
affy insilicomerging
5.6 years ago pratikshasharma47 • 0
1
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3
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Two microarrays merging (different experiments) - Error with esets (inSilicoMerging package)
inSilicoMerging microarray affymetrix microarrays
updated 6.0 years ago by 67k • written 6.0 years ago by • 0
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1.5k
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InSilicoMerging error when using merge
insilicomerging error insilicodb expressionset
7.8 years ago andreas.pittroff • 0
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3
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1.7k
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error in drawing MDS plot for eset
MDSplot geneexpression insilicomerging
updated 8.7 years ago by 67k • written 8.7 years ago by ▴ 20
4
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8
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2.1k
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Annotation Problem regarding double platform merged microarray eset using the inSilicoMerging R package, after differential expression analysis
inSilicoMerging doubleannotation affymetrix microarrays limma inSilicoDB
9.3 years ago svlachavas ▴ 830
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2
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2.5k
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Combining ExpressionSet objects : error with function merge() in "inSilicoMerging"
combine expresiondataset insilicomerging
9.3 years ago alakatos ▴ 130
6
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4
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4.3k
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Merge different datasets and perform differential expression analysis in limma
insilicomerging batcheffect limma differential gene expression bioconductor
updated 9.4 years ago by ★ 28k • written 9.4 years ago by ▴ 830
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problem with insilicoMerging
insilicomerging
9.5 years ago carol white ▴ 680
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2.2k
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Appropriate merge of batches of the same array to create a final total ExpressionSet
frma bioconductor batcheffect Primeview insilicomerging
updated 9.6 years ago by ▴ 830 • written 9.6 years ago by ▴ 830
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'DWD' method in 'inSilicoMerging' packages
inSilicoMerging
10.0 years ago Li Liu ▴ 100
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1
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1.5k
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inSilicoMerging:::mergeCOMBAT covariates
inSilicoMerging inSilicoMerging
updated 10.6 years ago by ▴ 10 • written 10.6 years ago by ▴ 50
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6
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2.6k
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DWD method for batch effect removal
inSilicoMerging inSilicoMerging
updated 11.3 years ago by ★ 8.2k • written 11.3 years ago by ▴ 100
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inSilicoMerging and Limma
Colon hgu133a2 hgu133plus2 limma inSilicoMerging Colon hgu133a2 hgu133plus2 limma
11.5 years ago Ed Siefker ▴ 230
13 results • Page 1 of 1
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Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
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Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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