Bioconductor InSilicoMerging

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771

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affy insilicomerging

5.8 years ago pratikshasharma47 • 0

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1.3k

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inSilicoMerging microarray affymetrix microarrays

updated 6.1 years ago by James W. MacDonald 67k • written 6.1 years ago by Adam_M • 0

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insilicomerging error insilicodb expressionset

8.0 years ago andreas.pittroff • 0

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MDSplot geneexpression insilicomerging

updated 8.8 years ago by James W. MacDonald 67k • written 8.8 years ago by Shamim Sarhadi ▴ 20

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inSilicoMerging doubleannotation affymetrix microarrays limma inSilicoDB

9.4 years ago svlachavas ▴ 840

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combine expresiondataset insilicomerging

9.5 years ago alakatos ▴ 130

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4.3k

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insilicomerging batcheffect limma differential gene expression bioconductor

updated 9.5 years ago by Aaron Lun ★ 28k • written 9.5 years ago by svlachavas ▴ 840

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insilicomerging

9.6 years ago carol white ▴ 680

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frma bioconductor batcheffect Primeview insilicomerging

updated 9.8 years ago by Matthew McCall ▴ 830 • written 9.8 years ago by svlachavas ▴ 840

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inSilicoMerging

10.2 years ago Li Liu ▴ 100

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1.5k

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inSilicoMerging inSilicoMerging

updated 10.7 years ago by Quentin De Clerck ▴ 10 • written 10.7 years ago by François Lefebvre ▴ 50

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2.6k

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inSilicoMerging inSilicoMerging

updated 11.5 years ago by Dan Tenenbaum ★ 8.2k • written 11.5 years ago by Li Liu ▴ 100

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Colon hgu133a2 hgu133plus2 limma inSilicoMerging Colon hgu133a2 hgu133plus2 limma

11.6 years ago Ed Siefker ▴ 230

13 results • Page 1 of 1

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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by alserg ▴ 280

`NES > 0` means that your gene set has more genes with positive logFC/stat. In your case these genes should be up in Subset1. However, if y…

Answer: affymetrix by James W. MacDonald 67k

When posting it helps to think about the people you are asking for help. Your post is hidden within the dummy text that comes up when you i…

Answer: Problems with GSEA by Guido Hooiveld ★ 4.1k

The error `Duplicate values in names(stats) not allowed` (from `fgsea` that is used under the hood) shows that the input is not unique; in …

Answer: Error compiling Rbowtie2 in R-4.4 (Bioconductor 3.20 and probably 3.19) by ja.garcia • 0

It has been fixed by the Rbowtie2 maintainers in version 2.12.2. Thank you for the quick fix!

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

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Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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