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inSilicoMerging
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table (pData(eset_NONE)[,"Study"]); table(pData(eset_NONE)[,"Disease"]);
affy
insilicomerging
5.2 years ago
pratikshasharma47
• 0
1
vote
3
replies
1.2k
views
Two microarrays merging (different experiments) - Error with esets (inSilicoMerging package)
inSilicoMerging
microarray
affymetrix microarrays
updated 5.6 years ago by
James W. MacDonald
66k • written 5.6 years ago by
Adam_M
• 0
0
votes
1
reply
1.4k
views
InSilicoMerging error when using merge
insilicomerging
error
insilicodb
expressionset
7.4 years ago
andreas.pittroff
• 0
0
votes
3
replies
1.6k
views
error in drawing MDS plot for eset
MDSplot
geneexpression
insilicomerging
updated 8.3 years ago by
James W. MacDonald
66k • written 8.3 years ago by
Shamim Sarhadi
▴ 20
4
votes
8
replies
1.9k
views
Annotation Problem regarding double platform merged microarray eset using the inSilicoMerging R package, after differential expression analysis
inSilicoMerging
doubleannotation
affymetrix microarrays
limma
inSilicoDB
8.9 years ago
svlachavas
▴ 830
1
vote
2
replies
2.4k
views
Combining ExpressionSet objects : error with function merge() in "inSilicoMerging"
combine
expresiondataset
insilicomerging
9.0 years ago
alakatos
▴ 130
6
votes
4
replies
4.1k
views
Merge different datasets and perform differential expression analysis in limma
insilicomerging
batcheffect
limma
differential gene expression
bioconductor
updated 9.0 years ago by
Aaron Lun
★ 28k • written 9.0 years ago by
svlachavas
▴ 830
0
votes
0
replies
963
views
problem with insilicoMerging
insilicomerging
9.1 years ago
carol white
▴ 680
1
vote
5
replies
2.0k
views
Appropriate merge of batches of the same array to create a final total ExpressionSet
frma
bioconductor
batcheffect
Primeview
insilicomerging
updated 9.2 years ago by
Matthew McCall
▴ 830 • written 9.2 years ago by
svlachavas
▴ 830
0
votes
0
replies
1.2k
views
'DWD' method in 'inSilicoMerging' packages
inSilicoMerging
9.6 years ago
Li Liu
▴ 100
0
votes
1
reply
1.3k
views
inSilicoMerging:::mergeCOMBAT covariates
inSilicoMerging
inSilicoMerging
updated 10.2 years ago by
Quentin De Clerck
▴ 10 • written 10.2 years ago by
François Lefebvre
▴ 50
0
votes
6
replies
2.4k
views
DWD method for batch effect removal
inSilicoMerging
inSilicoMerging
updated 10.9 years ago by
Dan Tenenbaum
★ 8.2k • written 10.9 years ago by
Li Liu
▴ 100
0
votes
2
replies
1.6k
views
inSilicoMerging and Limma
Colon
hgu133a2
hgu133plus2
limma
inSilicoMerging
Colon
hgu133a2
hgu133plus2
limma
11.1 years ago
Ed Siefker
▴ 230
13 results • Page
1 of 1
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Replies
Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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