Bioconductor Illuminaio

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IlluminaHumanMethylation450BeadChip illuminaio normalize450K

3.0 years ago Sarah • 0

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methylationArrayAnalysis illuminaio beadarray DSS bsseqData

3.2 years ago Jojo • 0

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1.3k

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illuminaio illumina human ht-12 v4 gene expression micorarray

updated 7.1 years ago by Mike Smith ★ 6.6k • written 7.1 years ago by makoouji • 0

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illuminaio illuminahumanmethylationepicmanifest minfi

updated 7.3 years ago by Kasper Daniel Hansen ★ 6.5k • written 7.3 years ago by Giovanni Calice ▴ 160

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limma illuminaio idat gzip

updated 8.0 years ago by Matthew Ritchie ▴ 1000 • written 8.0 years ago by Guido Hooiveld ★ 4.1k

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illuminaio normalization

updated 8.0 years ago by Matthew Ritchie ▴ 1000 • written 9.7 years ago by Stephen Piccolo ▴ 600

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illuminaio limma

8.4 years ago • updated 4.5 years ago h.mon • 0

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minfi illuminaio epic

8.8 years ago m.van_iterson ▴ 20

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limma lumi illuminaio illimina 450k methylation microarray

9.1 years ago Adam • 0

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2.8k

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illuminaio idat beadarray

updated 9.6 years ago by Mike Smith ★ 6.6k • written 9.7 years ago by willj ▴ 30

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limma illuminaio illumina human WG6v2

updated 9.8 years ago by Matthew Ritchie ▴ 1000 • written 9.9 years ago by Gabriel Nathan Kaufman, Mr ▴ 60

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illuminaio idat

10.2 years ago lacion • 0

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SNP illuminaio SNP illuminaio

updated 11.4 years ago by Kasper Daniel Hansen ★ 6.5k • written 11.4 years ago by Mike Smith ★ 6.6k

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Normalization limma beadarray lumi illuminaio Normalization limma beadarray lumi

11.4 years ago Kasper Daniel Hansen ★ 6.5k

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6.9k

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beadarray lumi illuminaio idat

updated 3.4 years ago by Gordon Smyth 52k • written 11.4 years ago by Sean Davis 21k

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Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You can use [bioc-run][1] to simplify things as well. [1]: https://github.com/Bioconductor/bioc-run/tree/devel

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You show how you modified the container, but not how you are running it, which is the critical part.

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply. > Per sample all counts are scaled by the same size factor so I strongly assume that something was parsed here …

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

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Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

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