Bioconductor Illuminaio

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IlluminaHumanMethylation450BeadChip illuminaio normalize450K

3.0 years ago Sarah • 0

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methylationArrayAnalysis illuminaio beadarray DSS bsseqData

3.2 years ago Jojo • 0

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illuminaio illumina human ht-12 v4 gene expression micorarray

updated 7.1 years ago by Mike Smith ★ 6.6k • written 7.1 years ago by makoouji • 0

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illuminaio illuminahumanmethylationepicmanifest minfi

updated 7.3 years ago by Kasper Daniel Hansen ★ 6.5k • written 7.3 years ago by Giovanni Calice ▴ 160

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limma illuminaio idat gzip

updated 7.9 years ago by Matthew Ritchie ▴ 1000 • written 7.9 years ago by Guido Hooiveld ★ 4.1k

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illuminaio normalization

updated 7.9 years ago by Matthew Ritchie ▴ 1000 • written 9.7 years ago by Stephen Piccolo ▴ 600

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illuminaio limma

8.4 years ago • updated 4.5 years ago h.mon • 0

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minfi illuminaio epic

8.8 years ago m.van_iterson ▴ 20

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limma lumi illuminaio illimina 450k methylation microarray

9.0 years ago Adam • 0

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illuminaio idat beadarray

updated 9.6 years ago by Mike Smith ★ 6.6k • written 9.6 years ago by willj ▴ 30

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limma illuminaio illumina human WG6v2

updated 9.8 years ago by Matthew Ritchie ▴ 1000 • written 9.8 years ago by Gabriel Nathan Kaufman, Mr ▴ 60

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illuminaio idat

10.1 years ago lacion • 0

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SNP illuminaio SNP illuminaio

updated 11.3 years ago by Kasper Daniel Hansen ★ 6.5k • written 11.3 years ago by Mike Smith ★ 6.6k

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Normalization limma beadarray lumi illuminaio Normalization limma beadarray lumi

11.4 years ago Kasper Daniel Hansen ★ 6.5k

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beadarray lumi illuminaio idat

updated 3.3 years ago by Gordon Smyth 52k • written 11.4 years ago by Sean Davis 21k

15 results • Page 1 of 1

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Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…

Comment: fast apply on RleList by story.benjamin ▴ 20

Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…

Answer: fast apply on RleList by James W. MacDonald 68k

There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…

Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k

It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…

Comment: how to use `arrayWeightsQuick()`? by matthew • 0

In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.

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annotation EpicV2

Answer: fast apply on RleList

Answer: BiocParallel_1.40.1.tar.gz not available

Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

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Popular Question to Ariel Chernomoretz ▴ 170