Bioconductor Idat

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1.9k

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idat illumina limma read.idat

updated 4.0 years ago by Gordon Smyth 52k • written 4.0 years ago by bastien_chassagnol • 0

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4.3k

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minfi methylation idat samplesheet

updated 3.7 years ago by sci_djw • 0 • written 5.6 years ago by researcher • 0

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5.8k

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minfi read.metharray.exp idat HM450k

7.2 years ago poojitha.stemcell ▴ 10

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2.1k

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gwastools idat gds format

updated 7.4 years ago by Stephanie M. Gogarten ▴ 870 • written 7.4 years ago by catbriggsm • 0

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1.9k

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limma illuminaio idat gzip

updated 7.6 years ago by Matthew Ritchie ▴ 1000 • written 7.6 years ago by Guido Hooiveld ★ 4.1k

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2.2k

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methylation illumina EPIC methylationepic idat

updated 7.6 years ago by Guido Hooiveld ★ 4.1k • written 7.6 years ago by Ellen O • 0

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2.3k

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minfi idat annotation EPIC

updated 7.8 years ago by xue.zhang • 0 • written 7.8 years ago by Frocha ▴ 20

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11k

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microarray illumina idat

updated 8.9 years ago by Gordon Smyth 52k • written 8.9 years ago by kritikamish99 ▴ 10

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2.6k

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lumidat idat microarray illumina

updated 9.3 years ago by Mark Cowley ▴ 400 • written 9.3 years ago by willj ▴ 30

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2.5k

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illuminaio idat beadarray

updated 9.3 years ago by Mike Smith ★ 6.6k • written 9.3 years ago by willj ▴ 30

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2.2k

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crlmm idat

updated 9.5 years ago by Matthew Ritchie ▴ 1000 • written 9.5 years ago by Shi, Tao ▴ 720

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2.5k

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illuminaio idat

9.8 years ago lacion • 0

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6.4k

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beadarray lumi illuminaio idat

updated 3.0 years ago by Gordon Smyth 52k • written 11.1 years ago by Sean Davis 21k

13 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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