Bioconductor Hugene20st

Showing : hugene20st • reset

2

votes

2

replies

1.8k

views

oligo hugene20st

updated 8.5 years ago by James W. MacDonald 67k • written 8.5 years ago by giroudpaul ▴ 40

1

vote

2

replies

1.3k

views

software error go microarray oligo hugene20st

updated 9.3 years ago by James W. MacDonald 67k • written 9.3 years ago by santi.cabellos ▴ 10

0

votes

2

replies

1.7k

views

hugene20sttranscriptcluster.db lincRNA annotation Affymetrix microarrays HuGene20st

updated 9.5 years ago by James W. MacDonald 67k • written 9.5 years ago by maria.maqueda • 0

3 results • Page 1 of 1

Recent ...

Replies

Answer: Epic v2 Annotation CpG_maf source? by James W. MacDonald 67k

Those all come from dbSNP by way of UCSC. [See here][1], particularly lines 114 and onward. Here is no MAF for a CpG. The MAF is for the…

Comment: Deseq2 res Function by James W. MacDonald 67k

In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…

Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k

You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …

Comment: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k

So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…

Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Votes

Answer: Deseq2 res Function

Answer: ANOVA like approach of edgeR

Awards • All