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hub genes
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WGCNA with distance matrix only from newick data.
WGCNA
eigengene
hub genes
7.4 years ago
yifangt
▴ 20
3
votes
2
replies
2.9k
views
Finding nearest neighbors of given hub gene in a co-expression network module
wgcna
rbgl
graph
coexpression
hub genes
updated 9.0 years ago by
Peter Langfelder
★ 3.0k • written 9.0 years ago by
Alan Smith
▴ 150
0
votes
1
reply
2.8k
views
question on visANT after WGCNA
wgcna
visant
module
hub genes
updated 9.0 years ago by
etycksen
• 0 • written 9.1 years ago by
agattorosso
• 0
14
votes
4
replies
16k
views
WGCNA Hub Gene Selection Method
WGCNA
Hub Genes
KmE
Intramodular Connectivity
updated 9.7 years ago by
Peter Langfelder
★ 3.0k • written 9.7 years ago by
brohawndg
▴ 150
4 results • Page
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Answer: Origin of the labels for the SingleCellMultiModal dataset
by
ATpoint
★ 4.8k
If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
ATpoint
★ 4.8k
That plot looks extremely worrying. You have very unbalanced DE profiles and clearly two populations of peaks on the right. I would make su…
Answer: Having Trouble Using CNE12() and CNE21() in CNEr
by
1324087964
• 0
![enter image description here][1] [1]: /media/images/d1a91557-b19e-4fbf-b5a1-c4fd42b9
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
• 0
Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…
Comment: DiffBind can't find a DAR
by
ATpoint
★ 4.8k
"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …
Votes
Comment: DESeq - help with pair wise comparisons
Answer: Is random access by row index possible for an indexed VCF file?
Answer: Is random access by row index possible for an indexed VCF file?
Answer: SingleR with multiple single cell references
Answer: SingleR with multiple single cell references
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