Bioconductor Htseqcounts

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1.7k

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deseq2 deseq edgeR rnaseq htseqcounts

7.2 years ago Deepali • 0

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2.3k

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edger htseqcounts

updated 7.3 years ago by Gordon Smyth 52k • written 7.3 years ago by Bioinformatics ▴ 30

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R summarizeoverlaps htseqcounts

updated 7.5 years ago by thokall ▴ 160 • written 7.5 years ago by Walter F. Baumann ▴ 10

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4.9k

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htseqcounts edger

updated 2.6 years ago by Randy • 0 • written 7.7 years ago by mictadlo ▴ 10

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3.7k

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edger htseqcounts

updated 7.7 years ago by Gordon Smyth 52k • written 7.7 years ago by mictadlo ▴ 10

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htseqcounts star rnaseq

7.7 years ago Ahdee ▴ 60

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2.8k

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featurecounts SAM htseqcounts

updated 22 months ago by Yang Liao ▴ 450 • written 8.0 years ago by courtney.stairs • 0

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4.0k

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chipseq deseq2 htseqcounts

updated 2.2 years ago by mhashan.j ▴ 10 • written 8.2 years ago by JunLVI ▴ 40

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edger htseqcounts rnaseq

updated 8.4 years ago by Aaron Lun ★ 28k • written 8.4 years ago by romsdahl • 0

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dexseq_count dexseq htseqcounts

8.6 years ago as1023 • 0

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deseq2 pca tximportdata htseqcounts

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by jarod_v6@libero.it ▴ 40

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deseq2 goseq htseqcounts rnaseq plant

updated 8.9 years ago by Gordon Smyth 52k • written 8.9 years ago by Ben Mansfeld • 0

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by sakura.nussbaum ▴ 10

13 results • Page 1 of 1

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Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Votes

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

A: Normalized counts from DESeq2 results in similar but not equal total read count?

A: DESeq2: Different Dispersions for different sample groups

A: Contrasts & coefficients in limma

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