Bioconductor Htseqcounts

Showing : htseqcounts • reset

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1.6k

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deseq2 deseq edgeR rnaseq htseqcounts

7.2 years ago Deepali • 0

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2.2k

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edger htseqcounts

updated 7.2 years ago by Gordon Smyth 52k • written 7.2 years ago by Bioinformatics ▴ 30

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R summarizeoverlaps htseqcounts

updated 7.4 years ago by thokall ▴ 160 • written 7.4 years ago by Walter F. Baumann ▴ 10

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4.9k

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htseqcounts edger

updated 2.5 years ago by Randy • 0 • written 7.6 years ago by mictadlo ▴ 10

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3.7k

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edger htseqcounts

updated 7.6 years ago by Gordon Smyth 52k • written 7.6 years ago by mictadlo ▴ 10

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htseqcounts star rnaseq

7.6 years ago Ahdee ▴ 60

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2.7k

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featurecounts SAM htseqcounts

updated 21 months ago by Yang Liao ▴ 450 • written 7.9 years ago by courtney.stairs • 0

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chipseq deseq2 htseqcounts

updated 2.1 years ago by mhashan.j ▴ 10 • written 8.1 years ago by JunLVI ▴ 40

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edger htseqcounts rnaseq

updated 8.3 years ago by Aaron Lun ★ 28k • written 8.3 years ago by romsdahl • 0

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1.3k

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dexseq_count dexseq htseqcounts

8.6 years ago as1023 • 0

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deseq2 pca tximportdata htseqcounts

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by jarod_v6@libero.it ▴ 40

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deseq2 goseq htseqcounts rnaseq plant

updated 8.9 years ago by Gordon Smyth 52k • written 8.9 years ago by Ben Mansfeld • 0

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by sakura.nussbaum ▴ 10

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Answer: BiocParallel_1.40.1.tar.gz not available by shepherl 4.1k

Please try again. We have updated the BiocParallel package and BiocManager should work as expected (pulling 1.40.2 as source). The Landin…

Comment: BiocParallel_1.40.1.tar.gz not available by Johan • 0

Your approach works, but it implies manually rejecting the update of BiocParallel at each use of `BiocManager::install()`, which is pretty …

Comment: BiocParallel_1.40.1.tar.gz not available by shepherl 4.1k

Thank you for your question. We are aware of the issue and are in process of resolving.

Comment: BiocParallel_1.40.1.tar.gz not available by Mike Smith ★ 6.6k

I'm not sure why the source package isn't currently available, but when you get the to question `Old packages: 'BiocParallel' Update all/so…

Answer: DNAStringSet(x, start=, end=) loses quality information by stenlana035 • 0

Perhaps the hub genes are associated with other variables that have a negative correlation with the immune score rather than the immunologi…

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Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

Comment: BiocParallel_1.40.1.tar.gz not available

Limma outputs different results for same sample?

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