Bioconductor Htseqcounts

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1.6k

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deseq2 deseq edgeR rnaseq htseqcounts

7.0 years ago Deepali • 0

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2.2k

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edger htseqcounts

updated 7.0 years ago by Gordon Smyth 52k • written 7.0 years ago by Bioinformatics ▴ 30

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R summarizeoverlaps htseqcounts

updated 7.2 years ago by thokall ▴ 160 • written 7.2 years ago by Walter F. Baumann ▴ 10

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4.8k

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htseqcounts edger

updated 2.3 years ago by Randy • 0 • written 7.4 years ago by mictadlo ▴ 10

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3.6k

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edger htseqcounts

updated 7.4 years ago by Gordon Smyth 52k • written 7.4 years ago by mictadlo ▴ 10

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1.3k

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htseqcounts star rnaseq

7.4 years ago Ahdee ▴ 50

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2.6k

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featurecounts SAM htseqcounts

updated 18 months ago by Yang Liao ▴ 450 • written 7.7 years ago by courtney.stairs • 0

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3.9k

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chipseq deseq2 htseqcounts

updated 23 months ago by mhashan.j ▴ 10 • written 7.9 years ago by JunLVI ▴ 40

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1.2k

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edger htseqcounts rnaseq

updated 8.1 years ago by Aaron Lun ★ 28k • written 8.1 years ago by romsdahl • 0

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1.2k

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dexseq_count dexseq htseqcounts

8.4 years ago as1023 • 0

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2.0k

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deseq2 pca tximportdata htseqcounts

updated 8.6 years ago by Michael Love 43k • written 8.6 years ago by jarod_v6@libero.it ▴ 40

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deseq2 goseq htseqcounts rnaseq plant

updated 8.7 years ago by Gordon Smyth 52k • written 8.7 years ago by Ben Mansfeld • 0

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2.2k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by sakura.nussbaum ▴ 10

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Answer: Postdoc/RA position: Software Engineer For R and High-Performance Computing by delhirussianescortscom • 0

Our escorts are well-groomed and well-trained to give you ultimate seduction and deep pleasure. If you're looking for hot Delhi air hostess…

Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

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A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

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