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htseqcounts
•
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0
votes
4
replies
1.6k
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Normalise counts when tumour samples have normal tissue contamination.
deseq2
deseq
edgeR
rnaseq
htseqcounts
7.0 years ago
Deepali
• 0
0
votes
3
replies
2.2k
views
how to read htseq-count
edger
htseqcounts
updated 7.1 years ago by
Gordon Smyth
52k • written 7.1 years ago by
Bioinformatics
▴ 30
1
vote
1
reply
2.4k
views
Difference between SummarizeOverlaps and HTSeq
R
summarizeoverlaps
htseqcounts
updated 7.3 years ago by
thokall
▴ 160 • written 7.3 years ago by
Walter F. Baumann
▴ 10
1
vote
2
replies
4.8k
views
Length of 'group' must equal number of columns in 'counts'
htseqcounts
edger
updated 2.3 years ago by
Randy
• 0 • written 7.4 years ago by
mictadlo
▴ 10
3
votes
7
replies
3.6k
views
read counts for each gene for edgeR
edger
htseqcounts
updated 7.4 years ago by
Gordon Smyth
52k • written 7.4 years ago by
mictadlo
▴ 10
2
votes
2
replies
1.3k
views
Why does total unique map not equal to library size?
htseqcounts
star
rnaseq
7.4 years ago
Ahdee
▴ 50
0
votes
5
replies
2.6k
views
FeatureCounts output to SAM like htseq-counts?
featurecounts
SAM
htseqcounts
updated 19 months ago by
Yang Liao
▴ 450 • written 7.7 years ago by
courtney.stairs
• 0
2
votes
4
replies
3.9k
views
Error in DESeqDataSetFromHTSeqCount: Gene IDs (first column) differ between files.
chipseq
deseq2
htseqcounts
updated 23 months ago by
mhashan.j
▴ 10 • written 8.0 years ago by
JunLVI
▴ 40
1
vote
1
reply
1.2k
views
RNA-seq: EdgeR's togtags table not correlating to htseq-count's CPM values
edger
htseqcounts
rnaseq
updated 8.1 years ago by
Aaron Lun
★ 28k • written 8.1 years ago by
romsdahl
• 0
0
votes
0
replies
1.2k
views
DEXSeq error: erro in dexseq_count.py
dexseq_count
dexseq
htseqcounts
8.4 years ago
as1023
• 0
0
votes
7
replies
2.0k
views
PCA results different from th same sample but different counting method
deseq2
pca
tximportdata
htseqcounts
updated 8.6 years ago by
Michael Love
43k • written 8.6 years ago by
jarod_v6@libero.it
▴ 40
1
vote
4
replies
2.0k
views
GOSeq: analysis of unsupported genome after HTseq and DEseq2 - building gene lengths, comparing contrasts and understanding results.
deseq2
goseq
htseqcounts
rnaseq
plant
updated 8.7 years ago by
Gordon Smyth
52k • written 8.7 years ago by
Ben Mansfeld
• 0
1
vote
6
replies
2.2k
views
Error: could not find function "HTSeqCounts"
HTSeq
HTSeqCounts
Could not find function
DEXSeq
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
sakura.nussbaum
▴ 10
13 results • Page
1 of 1
Recent ...
Replies
Comment: error in ChAMP loading file
by
81becky
• 0
hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…
Answer: DESeq2 adujsted p-value cutoff seemingly not working
by
James W. MacDonald
68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
SofieK
• 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexploitss
• 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status
by
Renuka
• 0
how you did it pls explain
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
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