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hopach
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0
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Hopach: distancematrix and distancevector do not return identical results
documentation
bug
hopach
euclidean
distance
2.8 years ago
txema.heredia
• 0
1
vote
5
replies
6.0k
views
HOPACH error: "negative length vectors are not allowed" in distancematrix(). Matrix too large?
hopach
updated 9.6 years ago by
kpollard
▴ 110 • written 9.6 years ago by
ejliaw
• 0
0
votes
3
replies
1.3k
views
hopach generates a wrong output
hopach
9.9 years ago
Alogmail2@aol.com
▴ 90
0
votes
0
replies
1.6k
views
displaying clustering results in TreeView or MapleTree
Microarray
Clustering
Kidney
Ovarian
probe
hopach
Microarray
Clustering
Kidney
Ovarian
12.9 years ago
Mark Baumeister
▴ 40
0
votes
1
reply
1.5k
views
CRAN packages maintained by you
hexbin
gpls
RBGL
impute
Icens
hopach
maanova
RLMM
CORREP
cycle
hexbin
gpls
RBGL
Icens
updated 13.1 years ago by
Nicholas Lewin-Koh
▴ 430 • written 13.1 years ago by
Kurt Hornik
▴ 10
0
votes
13
replies
2.5k
views
Bioconductor Digest, Vol 87, Issue 10
Clustering
hopach
Clustering
hopach
updated 14.5 years ago by
Richard Pearson
▴ 160 • written 14.6 years ago by
avinash gupta
▴ 130
0
votes
0
replies
1.1k
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
15.1 years ago
Samuel GRANJEAUD - IR/ICIM
▴ 60
0
votes
0
replies
1.1k
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
15.4 years ago
Paolo Innocenti
▴ 320
0
votes
2
replies
1.4k
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
updated 15.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.5 years ago by
Paolo Innocenti
▴ 320
0
votes
0
replies
937
views
Hopach cluster quality metrics
hopach
hopach
16.1 years ago
Khan, Anar
▴ 30
0
votes
0
replies
1.0k
views
HOPACH and .cdt which doesn't work with javatreeview
Clustering
hopach
Clustering
hopach
16.2 years ago
Sébastien Tourlet
▴ 20
0
votes
1
reply
1.2k
views
HOPACH clustering of genes
Clustering
hopach
Clustering
hopach
updated 16.4 years ago by
Shannon, William
▴ 20 • written 16.4 years ago by
Nathan Harmston
▴ 100
0
votes
0
replies
868
views
Why makeoutput() function is not included in hopach 1.4.3 version
Microarray
Clustering
hopach
Microarray
Clustering
hopach
16.5 years ago
Suprabhath Reddy
▴ 10
0
votes
1
reply
1.1k
views
How to extract Hopach MSS value
Clustering
hopach
Clustering
hopach
updated 16.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 16.8 years ago by
Prateek Singh
▴ 20
0
votes
1
reply
3.0k
views
ReadAffy can not find function read.AnnotatedDataFrame
Biobase
genefilter
affydata
limma
simpleaffy
hopach
affyio
Biobase
genefilter
affydata
updated 18.0 years ago by
James W. MacDonald
67k • written 18.0 years ago by
Georg Otto
▴ 510
0
votes
0
replies
1.0k
views
hopach and heatmap
Clustering
hopach
Clustering
hopach
18.4 years ago
Ivan Baxter
▴ 60
0
votes
0
replies
1.0k
views
About Hopach package
hopach
hopach
19.2 years ago
kpollard
▴ 110
0
votes
0
replies
900
views
About Hopach package
Clustering
hopach
Clustering
hopach
19.3 years ago
z3076426@student.unsw.edu.au
▴ 10
0
votes
0
replies
1.1k
views
How to use distance functions from hopach package in a heatmap?
hopach
hopach
19.4 years ago
kpollard
▴ 110
0
votes
1
reply
1.1k
views
R terminated when i try HOPACH in a loop,why?
hopach
hopach
updated 19.6 years ago by
Seth Falcon
★ 7.4k • written 19.6 years ago by
Xiao Shi
▴ 90
0
votes
0
replies
994
views
(no subject)
hopach
hopach
19.7 years ago
kpollard
▴ 110
0
votes
0
replies
982
views
[BioC}: export Hopoah to treeview
hopach
hopach
19.7 years ago
Anthony Bosco
▴ 500
22 results • Page
1 of 1
Recent ...
Replies
Comment: Deseq2 res Function
by
James W. MacDonald
67k
In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…
Answer: Struggle with the replicates of epic array data
by
James W. MacDonald
67k
You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Robert Castelo
★ 3.4k
So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…
Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Votes
Appropriate use of the function treat of the limma package
Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
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