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hitc
•
reset
0
votes
3
replies
1.1k
views
HiTC import is throwing error
HiTC
importC
sparseMatrix
2.3 years ago
shikha
• 0
0
votes
6
replies
1.1k
views
HiTC problem exporting to my5C
HiTC
HiC-Pro
4.6 years ago
sergio.espeso-gil
• 0
1
vote
3
replies
1.6k
views
A/B compartments computation: control settings
HiTC
updated 3.2 years ago by
ahmed.abbaselmahdi
• 0 • written 5.3 years ago by
Konstantin Okonechnikov
▴ 40
1
vote
5
replies
1.7k
views
visualize Hi-C .cool file in R
Hi-C
HiTC
6.2 years ago
ta_awwad
▴ 10
0
votes
2
replies
1.3k
views
Gene Density computation in pca.hic
HiTC
6.3 years ago
cath
▴ 30
0
votes
5
replies
1.7k
views
HiTC importC not working
HiTC
IRanges
windows
debian
updated 6.6 years ago by
Nicolas Servant
▴ 260 • written 6.6 years ago by
René Wiegandt
• 0
3
votes
5
replies
1.6k
views
normLGF yields non-symetric matrices
HiTC
updated 7.5 years ago by
Nicolas Servant
▴ 260 • written 7.5 years ago by
enrique.vidal
▴ 10
1
vote
10
replies
2.4k
views
FourC object from scratch
hi-c
HiTC
fourcseq
9.0 years ago • updated 8.8 years ago
Nicolas Servant
▴ 260
0
votes
0
replies
1.3k
views
FourC object from scratch
hic-c
hitc
fourcseq
9.0 years ago
Nicolas Servant
▴ 260
4
votes
20
replies
2.7k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
9.1 years ago
Bogdan
▴ 670
0
votes
0
replies
983
views
normalization method for 5C
HiTC
9.1 years ago
Bogdan
▴ 670
0
votes
0
replies
1.2k
views
Problem importing 5C data
importing
HiTC
9.5 years ago
gugpuccio
▴ 10
0
votes
1
reply
2.7k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome
hexbin
BSgenome
IRanges
genomeIntervals
GenomicRanges
girafe
Rsamtools
HiTC
HiTC
updated 11.6 years ago by
Dan Tenenbaum
★ 8.2k • written 11.6 years ago by
Wim Kreinen
▴ 100
0
votes
4
replies
1.4k
views
genome_intervals and GRange objects/HiTC package
Annotation
HiTC
Annotation
HiTC
updated 11.7 years ago by
Valerie Obenchain
★ 6.8k • written 11.7 years ago by
Hermann Norpois
▴ 170
0
votes
1
reply
1.3k
views
HiTC: problem with HTClist
HiTC
HiTC
updated 11.7 years ago by
Martin Morgan
25k • written 11.7 years ago by
Hermann Norpois
▴ 170
15 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 20
Hi Maria, so what is the code you are using? By the 3rd way to conduct the analysis do you mean looking at the interaction model from part …
Comment: miRTarRnaseq library
by
María Calvo
• 0
Hello, in line with the previous questions, when the miRNA-mRNA interaction analysis is performed (3 rd way to conduct the analysis), I obt…
Answer: heatmap with batch effect
by
James W. MacDonald
67k
You have only one condition in the second batch, so it's not possible to remove the batch effect. You can probably adjust for it somewhat, …
Answer: how do I convert an Ilumn IDREF to a CPG loci
by
James W. MacDonald
67k
``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame with 865859 rows and 3 columns ch…
Answer: Which input data is acceptable for MAST?
by
Andrew_McDavid
▴ 270
Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…
Votes
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Comment: Convert HGVS Representation back to Reference Genome Coordinates
Answer: How to control batch effect if Group and batch are same?
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