Bioconductor Hitc

Showing : hitc • reset

votes

replies

1.1k

views

HiTC importC sparseMatrix

2.6 years ago shikha • 0

votes

replies

1.2k

views

HiTC HiC-Pro

4.9 years ago sergio.espeso-gil • 0

vote

replies

1.7k

views

HiTC

updated 3.5 years ago by ahmed.abbaselmahdi • 0 • written 5.5 years ago by Konstantin Okonechnikov ▴ 40

vote

replies

1.9k

views

Hi-C HiTC

6.5 years ago ta_awwad ▴ 10

votes

replies

1.4k

views

HiTC

6.6 years ago cath ▴ 30

votes

replies

1.8k

views

HiTC IRanges windows debian

updated 6.8 years ago by Nicolas Servant ▴ 260 • written 6.8 years ago by René Wiegandt • 0

votes

replies

1.7k

views

HiTC

updated 7.7 years ago by Nicolas Servant ▴ 260 • written 7.7 years ago by enrique.vidal ▴ 10

vote

replies

2.5k

views

hi-c HiTC fourcseq

9.2 years ago • updated 9.1 years ago Nicolas Servant ▴ 260

votes

replies

1.3k

views

hic-c hitc fourcseq

9.2 years ago Nicolas Servant ▴ 260

votes

replies

2.9k

views

HiTC gothic diffhic HiC

9.3 years ago Bogdan ▴ 670

votes

replies

1.0k

views

HiTC

9.4 years ago Bogdan ▴ 670

votes

replies

1.2k

views

importing HiTC

9.7 years ago gugpuccio ▴ 10

votes

2.8k

views

BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC

updated 11.8 years ago by Dan Tenenbaum ★ 8.2k • written 11.8 years ago by Wim Kreinen ▴ 100

votes

replies

1.5k

views

Annotation HiTC Annotation HiTC

updated 11.9 years ago by Valerie Obenchain ★ 6.8k • written 11.9 years ago by Hermann Norpois ▴ 170

votes

1.4k

views

HiTC HiTC

updated 11.9 years ago by Martin Morgan 25k • written 11.9 years ago by Hermann Norpois ▴ 170

15 results • Page 1 of 1

Recent ...

Replies

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

They provide the code they used for DGE analysis in a gitlab link that can be found in the paper. In there you can find: ```` # estimate d…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

It is not possible to use both. estimateGLMRobustDisp() estimates negative binomial dispersions for each gene, whereas glmQLFit() estimates…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…

Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Votes

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis

scater/scran with TPMs from Salmon - counts?

A: Full length single-cell RNA-seq - tximport output for downstream analysis

Awards • All