Bioconductor Hisat2

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hisat2 results

updated 2.0 years ago by ATpoint ★ 4.8k • written 2.0 years ago by ali • 0

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1.8k

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isoform RNA-seq hisat2 stringtie ballgown

4.5 years ago ra711 • 0

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2.2k

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hisat2 stringtie ballgown RNAseq

7.2 years ago • updated 6.9 years ago Nancy ▴ 10

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1.7k

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stringtie illumina hisat2 ballgown

updated 7.4 years ago by k.vitting.seerup ▴ 120 • written 7.4 years ago by amy16 • 0

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1.3k

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transcription hisat2

7.4 years ago zoukai3412085 • 0

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6.7k

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featurecounts hisat2 rna-seq mapping

updated 8.9 years ago by Wei Shi ★ 3.6k • written 8.9 years ago by Koen Van den Berge ▴ 180

6 results • Page 1 of 1

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Answer: how to use `arrayWeightsQuick()`? by Gordon Smyth 52k

Yes, that is the correct way to use `arrayWeightsQuick`. Thanks for pointing out that there is still a reference to `arrayWeightsSimple` i…

Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…

Comment: fast apply on RleList by story.benjamin ▴ 20

Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…

Answer: fast apply on RleList by James W. MacDonald 68k

There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…

Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k

It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…

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annotation EpicV2

Answer: fast apply on RleList

Answer: BiocParallel_1.40.1.tar.gz not available

Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

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Popular Question to Ariel Chernomoretz ▴ 170