Bioconductor Hisat2

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hisat2 results

updated 21 months ago by ATpoint ★ 4.6k • written 21 months ago by ali • 0

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isoform RNA-seq hisat2 stringtie ballgown

4.2 years ago ra711 • 0

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2.1k

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hisat2 stringtie ballgown RNAseq

6.9 years ago • updated 6.6 years ago Nancy ▴ 10

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stringtie illumina hisat2 ballgown

updated 7.1 years ago by k.vitting.seerup ▴ 120 • written 7.1 years ago by amy16 • 0

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transcription hisat2

7.1 years ago zoukai3412085 • 0

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6.5k

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featurecounts hisat2 rna-seq mapping

updated 8.6 years ago by Wei Shi ★ 3.6k • written 8.7 years ago by Koen Van den Berge ▴ 180

6 results • Page 1 of 1

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Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k

Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0

But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…

Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0

After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```

Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

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A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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