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hisat2
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HISAT2 mapping
hisat2
results
updated 22 months ago by
ATpoint
★ 4.6k • written 22 months ago by
ali
• 0
0
votes
0
replies
1.7k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform
RNA-seq
hisat2
stringtie
ballgown
4.3 years ago
ra711
• 0
0
votes
0
replies
2.1k
views
RNA-seq with hisat2+stringtie+ballgown
hisat2
stringtie
ballgown
RNAseq
7.0 years ago • updated 6.8 years ago
Nancy
▴ 10
1
vote
1
reply
1.6k
views
RNA-seq for DGE
stringtie
illumina
hisat2
ballgown
updated 7.2 years ago by
k.vitting.seerup
▴ 120 • written 7.2 years ago by
amy16
• 0
0
votes
1
reply
1.3k
views
Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
transcription
hisat2
7.2 years ago
zoukai3412085
• 0
4
votes
5
replies
6.5k
views
Hisat2 vs featureCounts summary statistics
featurecounts
hisat2
rna-seq
mapping
updated 8.7 years ago by
Wei Shi
★ 3.6k • written 8.8 years ago by
Koen Van den Berge
▴ 180
6 results • Page
1 of 1
Recent ...
Replies
Comment: error in ChAMP loading file
by
81becky
• 0
hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…
Answer: DESeq2 adujsted p-value cutoff seemingly not working
by
James W. MacDonald
68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
SofieK
• 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexploitss
• 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status
by
Renuka
• 0
how you did it pls explain
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
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