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Bioconductor unable to update 'curl'
curl
HELP
15 days ago
kagodwi2
• 0
0
votes
2
replies
542
views
iam not able to do retrive data using GEOquery R package
HELP
updated 12 weeks ago by
James W. MacDonald
68k • written 12 weeks ago by
ramya20kumar20
• 0
0
votes
9
replies
1.6k
views
'path' must be string
HELP
path
updated 8 months ago by
James W. MacDonald
68k • written 8 months ago by
cpierce2
• 0
0
votes
1
reply
573
views
Gene expression analysis and network construction for bachelor thesis
bachelorthesis
help
HELP
updated 20 months ago by
DrFizz
• 0 • written 20 months ago by
melander
• 0
2
votes
6
replies
2.3k
views
Help me find the bug
DESeq2
HELP
2.1 years ago
Michael
• 0
0
votes
4
replies
2.3k
views
Volcano plot becomes flipped when I add a third condition
DESeq2
volcanoplot
deseq
HELP
contrast
updated 2.1 years ago by
Basti
▴ 780 • written 2.1 years ago by
Michael
• 0
0
votes
2
replies
990
views
Empty matrix
ChIPpeakAnno
Normalization
EnrichedHeatmap
HELP
TxDb.Celegans.UCSC.ce11.refGene
2.5 years ago
michela
▴ 20
3
votes
4
replies
1.6k
views
why makeGRangesFromDataFrame don't do the IRange
HELP
HelloRanges
updated 2.5 years ago by
James W. MacDonald
68k • written 2.5 years ago by
michela
▴ 20
0
votes
10
replies
2.1k
views
Peak annotation
HELP
ChIC.data
PeakDetection
ChipOnChipData
2.5 years ago
michela
▴ 20
0
votes
1
reply
854
views
Data visualization
HELP
Data
updated 2.6 years ago by
Guido Hooiveld
★ 4.1k • written 2.6 years ago by
mcclurejenniferc
• 0
2
votes
4
replies
2.6k
views
STRINGdb string_db$map error
STRINGdb
HELP
updated 2.2 years ago by
Rodrigo
▴ 10 • written 3.1 years ago by
Jessica
▴ 10
1
vote
2
replies
3.2k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP
ChIPpeakAnno
3.4 years ago
lexi.kellington
• 0
1
vote
9
replies
6.4k
views
DESeq problems
help
DESeq2
DESeqDataSetFromMatrix
rownames
updated 2.8 years ago by
Sanatan
• 0 • written 4.0 years ago by
dorina.jamniczky
• 0
3
votes
4
replies
1.9k
views
GEO + RNA-seq. Total Newbie.
RNASeqData
RNASeq
GEO
RNASeqR
HELP
4.0 years ago
hgalmoore
• 0
0
votes
1
reply
2.3k
views
setup microbiome error
help
software error
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
mafusa20
• 0
0
votes
2
replies
1.3k
views
Design matrix choice for time series experiment using limma
limma
time series
help
updated 6.3 years ago by
Aaron Lun
★ 28k • written 6.3 years ago by
rm1238
• 0
1
vote
4
replies
7.4k
views
ClusterProfiler - How to : input file, groupGo, enrichGo
clusterprofiler
input files
error
help
updated 8.1 years ago by
Guangchuang Yu
★ 1.2k • written 8.1 years ago by
Mataivic
• 0
4
votes
5
replies
2.8k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 8.8 years ago by
Aaron Lun
★ 28k • written 8.8 years ago by
knipehf
• 0
0
votes
7
replies
2.4k
views
DESeq2 with interest only for 1 gene
R
deseq2
differential gene expression
help
8.8 years ago
fischer87
• 0
0
votes
2
replies
1.6k
views
help me to analysis my data
limma
help
updated 9.4 years ago by
svlachavas
▴ 840 • written 9.4 years ago by
libya.tahani
• 0
20 results • Page
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Comment: BiocParallel_1.40.1.tar.gz not available
by
shepherl
4.1k
Thank you for your question. We are aware of the issue and are in process of resolving.
Comment: BiocParallel_1.40.1.tar.gz not available
by
Mike Smith
★ 6.6k
I'm not sure why the source package isn't currently available, but when you get the to question `Old packages: 'BiocParallel' Update all/so…
Answer: DNAStringSet(x, start=, end=) loses quality information
by
stenlana035
• 0
Perhaps the hub genes are associated with other variables that have a negative correlation with the immune score rather than the immunologi…
Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR
by
Gordon Smyth
52k
I don't understand your question, because there is no difference between limma or glmFit or glmQLFit in terms of spline modeling or the tes…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
• 0
Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…
Votes
Limma outputs different results for same sample?
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
Comment: DESeq - help with pair wise comparisons
Answer: Is random access by row index possible for an indexed VCF file?
Answer: Is random access by row index possible for an indexed VCF file?
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