Bioconductor Heatplus

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heatmap.2 pheatmap complexheatmap heatplus

updated 8.0 years ago by Gavin Kelly ▴ 690 • written 8.0 years ago by Bogdan ▴ 670

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heatmap heatplus

9.0 years ago Bernal-Mizrachi, Leon ▴ 50

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Heatplus Heatplus

updated 11.8 years ago by Dan Tenenbaum ★ 8.2k • written 11.8 years ago by Adriana Munoz ▴ 100

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Heatplus Heatplus

updated 12.0 years ago by Alexander Ploner ▴ 10 • written 12.0 years ago by Guest User ★ 13k

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Heatplus Heatplus

12.3 years ago Hoyles, Lesley ▴ 50

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Annotation GO yeast2 cdf Heatplus Annotation GO yeast2 cdf Heatplus

16.6 years ago lgautier@altern.org ▴ 950

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Annotation GO yeast2 cdf Heatplus Annotation GO yeast2 cdf Heatplus

16.6 years ago Hui-Yi Chu ▴ 160

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Microarray Cancer Heatplus Microarray Cancer Heatplus

16.9 years ago Gregory Warnes ▴ 50

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Heatplus Heatplus

updated 16.9 years ago by James W. MacDonald 68k • written 16.9 years ago by s.khalid@qmul.ac.uk ▴ 50

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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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