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hdf5array
•
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0
votes
2
replies
271
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Is it possible to parallelise saveHDF5SummarizedExperiment
HDF5Array
9 days ago • updated 7 days ago
Stefano Mangiola
▴ 20
3
votes
3
replies
668
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array
BiocGenerics
BiocParallel
Biobase
7 months ago
jacques.imbert
• 0
4
votes
6
replies
1.2k
views
Problem loading HDF5Array in R 4.3.2
HDF5Array
updated 8 months ago by
Akshay
• 0 • written 11 months ago by
Sarah
▴ 10
0
votes
2
replies
833
views
Error in H5Fopen
HDF5Array
updated 16 months ago by
James W. MacDonald
67k • written 16 months ago by
gabriele.favaretto
• 0
2
votes
3
replies
2.1k
views
Efficiently working with HDF5-backed SingleCellExperiments
HDF5Array
SingleCellExperiment
DelayedArray
2.2 years ago
merv
▴ 140
1
vote
1
reply
1.6k
views
Extract only dataframes from AnnData objects
rhdf5
HDF5Array
anndata
SingleCellExperiment
updated 2.2 years ago by
Peter Hickey
▴ 740 • written 2.2 years ago by
merv
▴ 140
5
votes
1
reply
3.3k
views
How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable format?
HDF5Array
SingleCellExperiment
DelayedArray
2.2 years ago
merv
▴ 140
0
votes
0
replies
1.3k
views
Combining multiple MTX (matrix market) files to HDF5 Array format
HDF5Array
SingleCellExperiment
DelayedArray
2.2 years ago
merv
▴ 140
4
votes
3
replies
1.3k
views
Problem opening hdf5 files previously created with HDF5Array functions
HDF5Array
updated 3.1 years ago by
Mike Smith
★ 6.6k • written 3.1 years ago by
eric.kern13
▴ 20
4
votes
13
replies
2.3k
views
Speeding up of DelayedArray::write_block()
HDF5Array
DelayedArray
updated 13 months ago by
Hervé Pagès
16k • written 3.2 years ago by
Koki
▴ 10
4
votes
3
replies
1.3k
views
Temporal directory setting for DelayedArray
HDF5Array
DelayedArray
3.4 years ago
Koki
▴ 10
2
votes
3
replies
1.3k
views
Generating a DelayedArray with a size greater than .Machine$integer.max
bit64
HDF5Array
DelayedArray
updated 3.4 years ago by
Hervé Pagès
16k • written 3.5 years ago by
Koki
▴ 10
3
votes
5
replies
1.6k
views
Block processing matrices of different dimensions with DelayedArray
HDF5Array
DelayedArray
updated 3.4 years ago by
Hervé Pagès
16k • written 3.5 years ago by
Pedro Baldoni
▴ 40
0
votes
1
reply
1.0k
views
How to incrementaly load the nzdata and nzindex from SparseArraySeed
TileDBArray
HDF5Array
DelayedArray
3.5 years ago
Koki
▴ 10
9
votes
8
replies
1.8k
views
Processing time of blockApply and DelayedArray
DelayedArray
HDF5Array
updated 3.5 years ago by
Hervé Pagès
16k • written 3.5 years ago by
Pedro Baldoni
▴ 40
2
votes
4
replies
1.3k
views
`aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size aware?
HDF5Array
DelayedArray
3.5 years ago
Koki
▴ 10
1
vote
2
replies
1.3k
views
Error: C stack usage of HDF5Array
DelayedArray
HDF5Array
3.6 years ago
Koki
▴ 10
2
votes
6
replies
1.7k
views
"dim<-" against on-disk arrays
DelayedArray
TileDBArray
HDF5Array
updated 3.5 years ago by
Hervé Pagès
16k • written 3.6 years ago by
Koki
▴ 10
6
votes
6
replies
2.0k
views
Is it possible to create `HDF5Array` Delayed Arrays from HDF5 files hosted on S3?
TileDBArray
HDF5Array
MultiAssayExperiment
3.8 years ago • updated 3.7 years ago
Thomas Sandmann
▴ 90
4
votes
2
replies
1.5k
views
HDF5Array Single cell experiment objects - can on-disk files change?
HDF5Array
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
sarah.williams1
▴ 40
1
vote
4
replies
2.1k
views
Trouble loading 'lumi' package
lumi
illumina
hdf5array
updated 6.3 years ago by
James W. MacDonald
67k • written 6.3 years ago by
Alexander Azarian
▴ 30
12
votes
15
replies
3.9k
views
error with HDF5Array
hdf5array
biocparallel
updated 6.5 years ago by
Mike Smith
★ 6.6k • written 6.6 years ago by
cath
▴ 30
4
votes
1
reply
2.7k
views
Using HDF5Array writeHDF5Array for a large dgCMatrix
HDF5Array
dgCMatrix
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
rubi
▴ 110
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Answer: Unlocking Potential: NURS FPX Strategies and Insights
by
efsane_kral2000
• 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights
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efsane_kral2000
• 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR
by
Gordon Smyth
51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data
by
Melisa Tecik
• 0
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by
James W. MacDonald
67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
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Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
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