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Showing :
hdf5array
•
reset
3
votes
3
replies
341
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array
BiocGenerics
BiocParallel
Biobase
12 weeks ago • updated 11 weeks ago
jacques.imbert
• 0
4
votes
6
replies
832
views
Problem loading HDF5Array in R 4.3.2
HDF5Array
updated 3 months ago by
Akshay
• 0 • written 7 months ago by
Sarah
▴ 10
0
votes
2
replies
590
views
Error in H5Fopen
HDF5Array
updated 11 months ago by
James W. MacDonald
66k • written 11 months ago by
gabriele.favaretto
• 0
2
votes
3
replies
1.8k
views
Efficiently working with HDF5-backed SingleCellExperiments
HDF5Array
SingleCellExperiment
DelayedArray
22 months ago • updated 21 months ago
merv
▴ 130
1
vote
1
reply
1.2k
views
Extract only dataframes from AnnData objects
rhdf5
HDF5Array
anndata
SingleCellExperiment
updated 22 months ago by
Peter Hickey
▴ 740 • written 22 months ago by
merv
▴ 130
5
votes
1
reply
2.8k
views
How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable format?
HDF5Array
SingleCellExperiment
DelayedArray
22 months ago
merv
▴ 130
0
votes
0
replies
1.1k
views
Combining multiple MTX (matrix market) files to HDF5 Array format
HDF5Array
SingleCellExperiment
DelayedArray
22 months ago
merv
▴ 130
4
votes
3
replies
1.1k
views
Problem opening hdf5 files previously created with HDF5Array functions
HDF5Array
updated 2.7 years ago by
Mike Smith
★ 6.5k • written 2.7 years ago by
eric.kern13
▴ 20
4
votes
13
replies
2.0k
views
Speeding up of DelayedArray::write_block()
HDF5Array
DelayedArray
updated 9 months ago by
Hervé Pagès
16k • written 2.8 years ago by
Koki
▴ 10
4
votes
3
replies
1.2k
views
Temporal directory setting for DelayedArray
HDF5Array
DelayedArray
3.0 years ago
Koki
▴ 10
2
votes
3
replies
1.2k
views
Generating a DelayedArray with a size greater than .Machine$integer.max
bit64
HDF5Array
DelayedArray
updated 3.0 years ago by
Hervé Pagès
16k • written 3.1 years ago by
Koki
▴ 10
3
votes
5
replies
1.4k
views
Block processing matrices of different dimensions with DelayedArray
HDF5Array
DelayedArray
updated 3.1 years ago by
Hervé Pagès
16k • written 3.1 years ago by
Pedro Baldoni
▴ 40
0
votes
1
reply
928
views
How to incrementaly load the nzdata and nzindex from SparseArraySeed
TileDBArray
HDF5Array
DelayedArray
3.1 years ago
Koki
▴ 10
9
votes
8
replies
1.6k
views
Processing time of blockApply and DelayedArray
DelayedArray
HDF5Array
updated 3.1 years ago by
Hervé Pagès
16k • written 3.1 years ago by
Pedro Baldoni
▴ 40
2
votes
4
replies
1.2k
views
`aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size aware?
HDF5Array
DelayedArray
3.1 years ago
Koki
▴ 10
1
vote
2
replies
1.2k
views
Error: C stack usage of HDF5Array
DelayedArray
HDF5Array
3.2 years ago
Koki
▴ 10
2
votes
6
replies
1.6k
views
"dim<-" against on-disk arrays
DelayedArray
TileDBArray
HDF5Array
updated 3.1 years ago by
Hervé Pagès
16k • written 3.2 years ago by
Koki
▴ 10
6
votes
6
replies
1.8k
views
Is it possible to create `HDF5Array` Delayed Arrays from HDF5 files hosted on S3?
TileDBArray
HDF5Array
MultiAssayExperiment
3.4 years ago
Thomas Sandmann
▴ 90
4
votes
2
replies
1.4k
views
HDF5Array Single cell experiment objects - can on-disk files change?
HDF5Array
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
sarah.williams1
▴ 40
1
vote
4
replies
1.9k
views
Trouble loading 'lumi' package
lumi
illumina
hdf5array
updated 5.9 years ago by
James W. MacDonald
66k • written 5.9 years ago by
Alexander Azarian
▴ 30
12
votes
15
replies
3.6k
views
error with HDF5Array
hdf5array
biocparallel
updated 6.1 years ago by
Mike Smith
★ 6.5k • written 6.2 years ago by
cath
▴ 30
4
votes
1
reply
2.4k
views
Using HDF5Array writeHDF5Array for a large dgCMatrix
HDF5Array
dgCMatrix
updated 6.3 years ago by
Aaron Lun
★ 28k • written 6.3 years ago by
rubi
▴ 110
22 results • Page
1 of 1
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Replies
Comment: limma comparison for small sample size and how to get covariance matrix
by
Gordon Smyth
51k
Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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