Bioconductor Hclust

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3.7k

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dendrogram hclust textanalysis R RStudio

3.7 years ago Abby ▴ 10

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1.8k

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deseq2 pca hclust

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by Arindam ▴ 80

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2.2k

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hclust hierarchical clustering clustering weight

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by danielle.newby • 0

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3.1k

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pheatmap hclust R dendrogram

7.6 years ago vd4mmind • 0

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1.8k

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WGCNA hclust

7.7 years ago bag59 • 0

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1.9k

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heatmap.2 hclust reorderfun

updated 7.9 years ago by James W. MacDonald 67k • written 7.9 years ago by b.nota ▴ 370

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1.9k

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clustering hclust maSigPro

updated 8.8 years ago by efejiroe • 0 • written 9.4 years ago by dimitri.leonid.lindenwald ▴ 50

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2.6k

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hclust heatmap

9.8 years ago rmgreer • 0

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4.4k

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wgcna dendrogram network hclust

updated 10.2 years ago by Keith Hughitt ▴ 180 • written 10.2 years ago by Jon Bråte ▴ 260

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3.9k

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wgcna hclust plotdendroandcolors dendrogram

updated 10.2 years ago by James W. MacDonald 67k • written 10.2 years ago by Keith Hughitt ▴ 180

10 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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