Bioconductor Hclust

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3.8k

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dendrogram hclust textanalysis R RStudio

3.8 years ago Abby ▴ 10

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1.8k

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deseq2 pca hclust

updated 5.3 years ago by Michael Love 43k • written 5.3 years ago by Arindam ▴ 80

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2.2k

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hclust hierarchical clustering clustering weight

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by danielle.newby • 0

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3.2k

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pheatmap hclust R dendrogram

7.7 years ago vd4mmind • 0

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1.8k

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WGCNA hclust

7.8 years ago bag59 • 0

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1.9k

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heatmap.2 hclust reorderfun

updated 7.9 years ago by James W. MacDonald 67k • written 7.9 years ago by b.nota ▴ 370

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1.9k

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clustering hclust maSigPro

updated 8.9 years ago by efejiroe • 0 • written 9.5 years ago by dimitri.leonid.lindenwald ▴ 50

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2.6k

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hclust heatmap

9.9 years ago rmgreer • 0

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4.4k

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wgcna dendrogram network hclust

updated 10.3 years ago by Keith Hughitt ▴ 180 • written 10.3 years ago by Jon Bråte ▴ 260

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3.9k

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wgcna hclust plotdendroandcolors dendrogram

updated 10.3 years ago by James W. MacDonald 67k • written 10.3 years ago by Keith Hughitt ▴ 180

10 results • Page 1 of 1

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Answer: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

The short answer is yes, you can use even a single sample to estimate the batch effect (and therefore control for it in otherwise confounde…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by alserg ▴ 280

`NES > 0` means that your gene set has more genes with positive logFC/stat. In your case these genes should be up in Subset1. However, if y…

Answer: affymetrix by James W. MacDonald 67k

When posting it helps to think about the people you are asking for help. Your post is hidden within the dummy text that comes up when you i…

Answer: Problems with GSEA by Guido Hooiveld ★ 4.1k

The error `Duplicate values in names(stats) not allowed` (from `fgsea` that is used under the hood) shows that the input is not unique; in …

Answer: Error compiling Rbowtie2 in R-4.4 (Bioconductor 3.20 and probably 3.19) by ja.garcia • 0

It has been fixed by the Rbowtie2 maintainers in version 2.12.2. Thank you for the quick fix!

Votes

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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