Bioconductor Hclust

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dendrogram hclust textanalysis R RStudio

4.1 years ago • updated 4.0 years ago Abby ▴ 10

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deseq2 pca hclust

updated 5.5 years ago by Michael Love 43k • written 5.5 years ago by Arindam ▴ 80

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hclust hierarchical clustering clustering weight

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by danielle.newby • 0

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pheatmap hclust R dendrogram

7.9 years ago vd4mmind • 0

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WGCNA hclust

8.0 years ago bag59 • 0

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heatmap.2 hclust reorderfun

updated 8.2 years ago by James W. MacDonald 68k • written 8.2 years ago by b.nota ▴ 370

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clustering hclust maSigPro

updated 9.2 years ago by efejiroe • 0 • written 9.7 years ago by dimitri.leonid.lindenwald ▴ 50

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hclust heatmap

10.2 years ago rmgreer • 0

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wgcna dendrogram network hclust

updated 10.6 years ago by Keith Hughitt ▴ 180 • written 10.6 years ago by Jon Bråte ▴ 260

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wgcna hclust plotdendroandcolors dendrogram

updated 10.6 years ago by James W. MacDonald 68k • written 10.6 years ago by Keith Hughitt ▴ 180

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Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0

There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…

Comment: Differing results with DESeq2 by JKim • 0

My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…

Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k

This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…

Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80

Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…

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remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

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Autobiographer to Paul Harrison ▴ 100

Popular Question to mohammedtoufiq91 ▴ 10