Bioconductor Hclust

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4.1k

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dendrogram hclust textanalysis R RStudio

3.9 years ago Abby ▴ 10

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1.9k

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deseq2 pca hclust

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by Arindam ▴ 80

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2.3k

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hclust hierarchical clustering clustering weight

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by danielle.newby • 0

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3.2k

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pheatmap hclust R dendrogram

7.8 years ago vd4mmind • 0

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1.8k

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WGCNA hclust

7.9 years ago bag59 • 0

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1.9k

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heatmap.2 hclust reorderfun

updated 8.0 years ago by James W. MacDonald 68k • written 8.0 years ago by b.nota ▴ 370

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2.0k

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clustering hclust maSigPro

updated 9.0 years ago by efejiroe • 0 • written 9.6 years ago by dimitri.leonid.lindenwald ▴ 50

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hclust heatmap

10.0 years ago rmgreer • 0

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4.5k

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wgcna dendrogram network hclust

updated 10.4 years ago by Keith Hughitt ▴ 180 • written 10.4 years ago by Jon Bråte ▴ 260

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4.0k

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wgcna hclust plotdendroandcolors dendrogram

updated 10.4 years ago by James W. MacDonald 68k • written 10.4 years ago by Keith Hughitt ▴ 180

10 results • Page 1 of 1

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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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