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guideseq
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0
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replies
252
views
Error in bam loading in getUniqueCleavageEvents() in GUIDEseq package
GUIDEseq
4 months ago
StayM
• 0
0
votes
6
replies
1.2k
views
Option to override removal of duplicate reads - GUIDEseq
GUIDEseq
updated 2.3 years ago by
Julie Zhu
★ 4.3k • written 2.3 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
722
views
GUIDEseq - Error combining individual steps into the pipeline
GUIDEseq
updated 2.5 years ago by
Julie Zhu
★ 4.3k • written 2.5 years ago by
sharvari gujja
▴ 40
0
votes
0
replies
466
views
GUIDEseq - filtering offtarget sites present in background controls
GUIDEseq
2.5 years ago
sharvari gujja
▴ 40
0
votes
0
replies
506
views
GUIDEseq: read count for each offtarget
GUIDEseq
2.5 years ago
sharvari gujja
▴ 40
0
votes
0
replies
606
views
Question about input to binReads.sh in GUIDEseq
GUIDEseq
2.5 years ago
sharvari gujja
▴ 40
3
votes
1
reply
790
views
Major on-target peak not appearing in GUIDEseq results
GUIDEseq
updated 3.8 years ago by
Julie Zhu
★ 4.3k • written 3.8 years ago by
David Kuo
• 0
0
votes
2
replies
1.0k
views
getUniqueCleavageEvents() not working in GUIDEseq package
GUIDEseq
updated 3.8 years ago by
Julie Zhu
★ 4.3k • written 3.8 years ago by
Tiffany
• 0
0
votes
4
replies
1.2k
views
GUIDEseq Error using offTargetAnalysisOfPeakRegions
GUIDEseq
updated 5.0 years ago by
Julie Zhu
★ 4.3k • written 5.0 years ago by
tomas.rodriguez
▴ 10
1
vote
3
replies
1.0k
views
GUIDEseq BED input error
GUIDEseq
5.0 years ago
tomas.rodriguez
▴ 10
0
votes
2
replies
1.1k
views
GUIDEseq Error in GAlignmentPairs
GAlignmentPairs
GUIDEseq
updated 5.2 years ago by
Julie Zhu
★ 4.3k • written 5.3 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
806
views
GUIDEseq outputDir error
GUIDEseq
updated 5.3 years ago by
Julie Zhu
★ 4.3k • written 5.3 years ago by
tomas.rodriguez
▴ 10
0
votes
3
replies
1.2k
views
GUIDEseq plus/minus strand inputs
GUIDEseq
updated 5.3 years ago by
Julie Zhu
★ 4.3k • written 5.3 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
760
views
GUIDEseq bam input
GUIDEseq
bam
updated 5.3 years ago by
Julie Zhu
★ 4.3k • written 5.3 years ago by
tomas.rodriguez
▴ 10
0
votes
0
replies
1.2k
views
Analyzing CIRCLE-seq data using GUIDEseq package
GUIDEseq
CIRCLE-seq
7.1 years ago
Julie Zhu
★ 4.3k
2
votes
4
replies
1.7k
views
GUIDESeq analysis - handling biological and technical replicates
guideseq
updated 7.2 years ago by
Julie Zhu
★ 4.3k • written 7.2 years ago by
aamir.mir
• 0
2
votes
1
reply
1.3k
views
createBarcodeFasta in GUIDEseq
GUIDEseq
updated 7.2 years ago by
Julie Zhu
★ 4.3k • written 7.2 years ago by
aamir.mir
• 0
17 results • Page
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Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Kent
• 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Answer: HilBertVis install error
by
James W. MacDonald
67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
Comment: Identical samples after deseq2 batch effect removal
by
maripane
• 0
Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…
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A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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