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guideseq
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333
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Error in bam loading in getUniqueCleavageEvents() in GUIDEseq package
GUIDEseq
9 months ago
StayM
• 0
0
votes
6
replies
1.4k
views
Option to override removal of duplicate reads - GUIDEseq
GUIDEseq
updated 2.8 years ago by
Julie Zhu
★ 4.3k • written 2.8 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
800
views
GUIDEseq - Error combining individual steps into the pipeline
GUIDEseq
updated 3.0 years ago by
Julie Zhu
★ 4.3k • written 3.0 years ago by
sharvari gujja
▴ 40
0
votes
0
replies
516
views
GUIDEseq - filtering offtarget sites present in background controls
GUIDEseq
3.0 years ago
sharvari gujja
▴ 40
0
votes
0
replies
564
views
GUIDEseq: read count for each offtarget
GUIDEseq
3.0 years ago
sharvari gujja
▴ 40
0
votes
0
replies
665
views
Question about input to binReads.sh in GUIDEseq
GUIDEseq
3.0 years ago
sharvari gujja
▴ 40
3
votes
1
reply
883
views
Major on-target peak not appearing in GUIDEseq results
GUIDEseq
updated 4.2 years ago by
Julie Zhu
★ 4.3k • written 4.2 years ago by
David Kuo
• 0
0
votes
2
replies
1.2k
views
getUniqueCleavageEvents() not working in GUIDEseq package
GUIDEseq
updated 4.2 years ago by
Julie Zhu
★ 4.3k • written 4.2 years ago by
Tiffany
• 0
0
votes
4
replies
1.3k
views
GUIDEseq Error using offTargetAnalysisOfPeakRegions
GUIDEseq
updated 5.4 years ago by
Julie Zhu
★ 4.3k • written 5.4 years ago by
tomas.rodriguez
▴ 10
1
vote
3
replies
1.1k
views
GUIDEseq BED input error
GUIDEseq
5.4 years ago
tomas.rodriguez
▴ 10
0
votes
2
replies
1.2k
views
GUIDEseq Error in GAlignmentPairs
GAlignmentPairs
GUIDEseq
updated 5.7 years ago by
Julie Zhu
★ 4.3k • written 5.7 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
874
views
GUIDEseq outputDir error
GUIDEseq
updated 5.7 years ago by
Julie Zhu
★ 4.3k • written 5.7 years ago by
tomas.rodriguez
▴ 10
0
votes
3
replies
1.3k
views
GUIDEseq plus/minus strand inputs
GUIDEseq
updated 5.7 years ago by
Julie Zhu
★ 4.3k • written 5.7 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
842
views
GUIDEseq bam input
GUIDEseq
bam
updated 5.7 years ago by
Julie Zhu
★ 4.3k • written 5.7 years ago by
tomas.rodriguez
▴ 10
0
votes
0
replies
1.3k
views
Analyzing CIRCLE-seq data using GUIDEseq package
GUIDEseq
CIRCLE-seq
7.5 years ago
Julie Zhu
★ 4.3k
2
votes
4
replies
1.8k
views
GUIDESeq analysis - handling biological and technical replicates
guideseq
updated 7.7 years ago by
Julie Zhu
★ 4.3k • written 7.7 years ago by
aamir.mir
• 0
2
votes
1
reply
1.4k
views
createBarcodeFasta in GUIDEseq
GUIDEseq
updated 7.7 years ago by
Julie Zhu
★ 4.3k • written 7.7 years ago by
aamir.mir
• 0
17 results • Page
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Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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