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An ESR essay about software design, and how it applies to Bioconductor
GUI GUI
written 20.7 years ago by ▴ 50
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1
reply
1.4k
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An ESR essay about software design, and how it applies to Bioconductor
GUI Cancer GUI Cancer
written 20.7 years ago by ▴ 810
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2
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1.4k
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An ESR essay about software design, and how it applies to Bioconductor
GUI GUI
updated 2.1 years ago by • 0 • written 20.7 years ago by ▴ 30
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1
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1.8k
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News: Plotly uprading issue in ChAMP package
ChAMP Epigenetics plotly Shiny GUI News
8.0 years ago • updated 7.8 years ago Yuan Tian ▴ 90
0
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1
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3.0k
views
CanceR: Survival plots
cancer gui survival Kaplan-Meier
9.6 years ago • updated 9.5 years ago kmezhoud ▴ 10
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1
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1.6k
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CRSIPRseek: no summary file generated
GUI GUI
updated 9.6 years ago by ▴ 40 • written 10.3 years ago by ★ 4.3k
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3
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3.8k
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Error installing impute package
GUI impute DNAcopy GUI impute DNAcopy
updated 10.4 years ago by ★ 8.2k • written 10.4 years ago by ▴ 80
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1
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1.2k
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Error in isVersioned(object)
GUI GUI
updated 10.6 years ago by 25k • written 10.6 years ago by ★ 13k
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8
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3.7k
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Error installing development version of DESeq2
GUI DESeq2 GUI DESeq2
updated 10.8 years ago by ★ 8.2k • written 10.8 years ago by ▴ 220
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1
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1.6k
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limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 10.9 years ago by 67k • written 10.9 years ago by ★ 13k
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1.9k
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How to compare GO term lists and create matching network?
GO Network GUI Organism GO Network GUI Organism
updated 11.0 years ago by ▴ 750 • written 11.0 years ago by ▴ 160
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3
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1.5k
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Error installing (some) Bioconductor packages on Mac OSX under R-3.0.0?
GUI impute DNAcopy GUI impute DNAcopy
updated 11.6 years ago by ★ 8.2k • written 11.6 years ago by ★ 3.0k
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947
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BSgenome.Dmelanogaster.UCSC.dm3 in R 3.0
GUI BSgenome BSgenome GUI BSgenome BSgenome
11.7 years ago Dan Tenenbaum ★ 8.2k
0
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7
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1.6k
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BSgenome.Dmelanogaster.UCSC.dm3 in R 3.0
GUI GUI
updated 11.7 years ago by ★ 8.2k • written 11.7 years ago by ★ 13k
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3
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2.2k
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Error: package/namespace load failed for ‘affycoretools
GO GUI Cancer GO GUI Cancer
updated 11.9 years ago by ★ 13k • written 11.9 years ago by ★ 2.0k
0
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3
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2.1k
views
Error: 'devel' version requires a more recent R
GUI Cancer easyRNASeq GUI Cancer easyRNASeq
updated 12.0 years ago by 21k • written 12.0 years ago by ★ 2.0k
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994
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sizepower
qPCR GUI qPCR GUI
12.1 years ago Michael Salbaum ▴ 80
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1
reply
2.1k
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ChipPeakAnno / GRanges isolate peaks that do NOT overlap
GO GUI BSgenome BSgenome GO GUI BSgenome BSgenome
updated 12.2 years ago by ★ 4.3k • written 12.2 years ago by ▴ 110
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4
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2.5k
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Problems installing EBImage - Symbol not found: _gdk_display
GUI convert OLIN EBImage BiocInstaller GUI convert OLIN EBImage BiocInstaller
12.2 years ago Dan Tenenbaum ★ 8.2k
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1
reply
1.4k
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Problems installing EBImage - Symbol not found: _gdk_display
GUI convert EBImage BiocInstaller GUI convert EBImage BiocInstaller
updated 12.2 years ago by ★ 8.2k • written 12.2 years ago by ▴ 30
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1
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1.4k
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Warnings with running easyRNASeq with easyRNASeq tutorial
RNASeq Annotation GUI Cancer BSgenome BSgenome easyRNASeq RNASeq Annotation GUI Cancer
updated 12.3 years ago by ★ 1.2k • written 12.3 years ago by ★ 2.0k
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2
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2.0k
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How to extract expressed genes from Affymetrix data
GUI GUI
updated 12.3 years ago by ▴ 130 • written 12.3 years ago by ▴ 50
0
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9
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2.2k
views
R IDE editor
GUI GUI
updated 12.5 years ago by ▴ 10 • written 12.5 years ago by ▴ 370
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12
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2.6k
views
problem with loading DESeq after upgrading from R 2.14 to R 2.15
GUI DESeq DEXSeq GUI DESeq DEXSeq
updated 12.6 years ago by ▴ 60 • written 12.6 years ago by ▴ 370
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0
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1.2k
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iFlow error messages
GUI iFlow GUI iFlow
12.8 years ago Gabriel Nathan Kaufman, Mr ▴ 60
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2
replies
1.4k
views
Problems normalizing scanarray express data with limma
GUI limma a4 GUI limma a4
updated 12.8 years ago by 51k • written 12.8 years ago by ▴ 10
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0
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1.1k
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question/issue with multtest mt.maxT
Sequencing Microarray GUI Category Sequencing Microarray GUI Category
13.5 years ago Les Dethlefsen ▴ 20
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2
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1.7k
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GGtools and GGBase installation problems
Infrastructure GUI Ruuid GGtools GGBase Infrastructure GUI Ruuid GGtools GGBase
updated 13.7 years ago by 6.7k • written 13.7 years ago by ▴ 460
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1
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1.8k
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GGtools and GGBase installation problems
GUI GGtools GGBase GUI GGtools GGBase
updated 13.7 years ago by 6.7k • written 13.7 years ago by ▴ 460
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0
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1.2k
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iFlow and current Bioconductor release
GUI Cancer iFlow GUI Cancer iFlow
13.8 years ago Chao-Jen Wong ▴ 580
0
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0
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1.0k
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iFlow and current Bioconductor release
GUI iFlow GUI iFlow
13.8 years ago Gabriel Nathan Kaufman, Mr ▴ 60
0
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6
replies
1.6k
views
Unable to Generate QC Report for mogene10stv1
Annotation GO GUI affy PROcess affyQCReport Annotation GO GUI affy PROcess affyQCReport
updated 13.8 years ago by 67k • written 13.8 years ago by ▴ 110
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0
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1.5k
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: [R] Problems wih EBImage for windows 7 --Loading required package: abind Error in library.dynam(lib, package, package.lib) : shared library 'EBImag…
GUI convert EBImage GUI convert EBImage
13.9 years ago Evan Misshula ▴ 80
0
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1
reply
2.1k
views
biomaRt - attribute mirbase is missing
SNP miRNA GUI biomaRt Vega SNP miRNA GUI biomaRt Vega
updated 13.9 years ago by ▴ 660 • written 13.9 years ago by ▴ 460
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0
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1.3k
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EBImage installs but won't load on Mac OS 10.6.4
GO GUI PROcess convert EBImage GO GUI PROcess convert EBImage
13.9 years ago W. A. Green ▴ 40
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1
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1.3k
views
EBImage installs but won't load on Mac OS 10.6.4
GO GUI PROcess convert EBImage GO GUI PROcess convert EBImage
updated 13.9 years ago by ▴ 40 • written 13.9 years ago by ▴ 310
1
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2
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3.4k
views
edgeR: error in readDGE
GUI edgeR GUI edgeR
updated 14.0 years ago by ★ 13k • written 14.0 years ago by ▴ 10
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0
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1.1k
views
Agi4x44PreProcess - filter.probes function
Annotation GUI zebrafish probe PROcess Annotation GUI zebrafish probe PROcess
14.1 years ago Neel Aluru ▴ 460
0
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3
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1.4k
views
EBImage installs but won't load on Mac OS 10.6.4
GUI PROcess convert EBImage GUI PROcess convert EBImage
updated 14.1 years ago by ▴ 310 • written 14.1 years ago by ▴ 40
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0
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1.2k
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Agi4x44PreProcess
GUI zebrafish probe AgiMicroRna GUI zebrafish probe AgiMicroRna
14.1 years ago Neel Aluru ▴ 460
0
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5
replies
2.2k
views
iFlow error in opening FCS and LMD files
GUI iFlow GUI iFlow
updated 14.3 years ago by ▴ 140 • written 14.3 years ago by ▴ 40
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0
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1.2k
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launch of free R/Bioconductor Cloud Computing web-service
GUI GUI
14.3 years ago hbolouri@caltech.edu ▴ 10
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1
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1.0k
views
Rgraphviz in windows 7 - problem with GUI?
GUI graph Rgraphviz GUI graph Rgraphviz
updated 14.3 years ago by 16k • written 14.3 years ago by ▴ 10
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3
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1.4k
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ShortRead report function crash in x86_64-apple
GUI GUI
written 14.5 years ago by ▴ 20
0
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7
replies
1.6k
views
rMAT tutorial. Data file too large?
Preprocessing GUI rMAT Preprocessing GUI rMAT
14.5 years ago Patrick Schorderet ▴ 50
0
votes
1
reply
1.0k
views
iFlow error
GUI iFlow GUI iFlow
updated 14.5 years ago by ★ 1.6k • written 14.5 years ago by ▴ 70
0
votes
1
reply
1.5k
views
iFlow
GUI GUI
updated 14.5 years ago by ★ 1.6k • written 14.5 years ago by ▴ 70
0
votes
1
reply
984
views
Problems using rMAT tutorial
GUI rMAT GUI rMAT
updated 14.6 years ago by ★ 13k • written 14.6 years ago by ▴ 50
0
votes
12
replies
3.7k
views
problems when trying to use biomaRt
GUI biomaRt GUI biomaRt
updated 14.7 years ago by ★ 2.0k • written 14.7 years ago by ▴ 50
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0
replies
792
views
Fwd: problems when trying to use biomaRt
GUI biomaRt GUI biomaRt
14.7 years ago Sean Davis 21k
50 results • Page 1 of 1
Recent ...
Replies
Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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