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An ESR essay about software design, and how it applies to Bioconductor
GUI
GUI
written 20.8 years ago by
Alex F. Bokov
▴ 50
0
votes
1
reply
1.4k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI
Cancer
GUI
Cancer
written 20.8 years ago by
A.J. Rossini
▴ 810
0
votes
2
replies
1.5k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI
GUI
updated 2.2 years ago by
Eric
• 0 • written 20.7 years ago by
Ann Loraine
▴ 30
0
votes
1
reply
1.8k
views
News:
Plotly uprading issue in ChAMP package
ChAMP
Epigenetics
plotly
Shiny
GUI
News
8.1 years ago • updated 7.9 years ago
Yuan Tian
▴ 90
0
votes
1
reply
3.0k
views
CanceR: Survival plots
cancer
gui
survival
Kaplan-Meier
9.7 years ago • updated 9.6 years ago
kmezhoud
▴ 10
0
votes
1
reply
1.6k
views
CRSIPRseek: no summary file generated
GUI
GUI
updated 9.6 years ago by
Dawid G. Nowak
▴ 40 • written 10.3 years ago by
Julie Zhu
★ 4.3k
0
votes
3
replies
3.9k
views
Error installing impute package
GUI
impute
DNAcopy
GUI
impute
DNAcopy
updated 10.5 years ago by
Dan Tenenbaum
★ 8.2k • written 10.5 years ago by
Levi Waldron
▴ 80
0
votes
1
reply
1.2k
views
Error in isVersioned(object)
GUI
GUI
updated 10.6 years ago by
Martin Morgan
25k • written 10.6 years ago by
Guest User
★ 13k
0
votes
8
replies
3.7k
views
Error installing development version of DESeq2
GUI
DESeq2
GUI
DESeq2
updated 10.9 years ago by
Dan Tenenbaum
★ 8.2k • written 10.9 years ago by
Kristina M Fontanez
▴ 220
0
votes
1
reply
1.6k
views
limma2annaffy
GO
GUI
annaffy
oligo
oligoClasses
KEGGREST
GO
GUI
annaffy
oligo
oligoClasses
KEGGREST
updated 10.9 years ago by
James W. MacDonald
67k • written 10.9 years ago by
Guest User
★ 13k
0
votes
1
reply
1.9k
views
How to compare GO term lists and create matching network?
GO
Network
GUI
Organism
GO
Network
GUI
Organism
updated 11.0 years ago by
Paul Shannon
▴ 750 • written 11.0 years ago by
biotech
▴ 160
0
votes
3
replies
1.5k
views
Error installing (some) Bioconductor packages on Mac OSX under R-3.0.0?
GUI
impute
DNAcopy
GUI
impute
DNAcopy
updated 11.6 years ago by
Dan Tenenbaum
★ 8.2k • written 11.6 years ago by
Peter Langfelder
★ 3.0k
0
votes
0
replies
952
views
BSgenome.Dmelanogaster.UCSC.dm3 in R 3.0
GUI
BSgenome
BSgenome
GUI
BSgenome
BSgenome
11.7 years ago
Dan Tenenbaum
★ 8.2k
0
votes
7
replies
1.6k
views
BSgenome.Dmelanogaster.UCSC.dm3 in R 3.0
GUI
GUI
updated 11.7 years ago by
Dan Tenenbaum
★ 8.2k • written 11.7 years ago by
Guest User
★ 13k
0
votes
3
replies
2.2k
views
Error: package/namespace load failed for ‘affycoretools
GO
GUI
Cancer
GO
GUI
Cancer
updated 11.9 years ago by
Steve Lianoglou
★ 13k • written 11.9 years ago by
Richard Friedman
★ 2.0k
0
votes
3
replies
2.1k
views
Error: 'devel' version requires a more recent R
GUI
Cancer
easyRNASeq
GUI
Cancer
easyRNASeq
updated 12.0 years ago by
Sean Davis
21k • written 12.0 years ago by
Richard Friedman
★ 2.0k
0
votes
0
replies
999
views
sizepower
qPCR
GUI
qPCR
GUI
12.2 years ago
Michael Salbaum
▴ 80
0
votes
1
reply
2.1k
views
ChipPeakAnno / GRanges isolate peaks that do NOT overlap
GO
GUI
BSgenome
BSgenome
GO
GUI
BSgenome
BSgenome
updated 12.2 years ago by
Julie Zhu
★ 4.3k • written 12.2 years ago by
José LÓPEZ
▴ 110
0
votes
4
replies
2.5k
views
Problems installing EBImage - Symbol not found: _gdk_display
GUI
convert
OLIN
EBImage
BiocInstaller
GUI
convert
OLIN
EBImage
BiocInstaller
12.3 years ago
Dan Tenenbaum
★ 8.2k
0
votes
1
reply
1.4k
views
Problems installing EBImage - Symbol not found: _gdk_display
GUI
convert
EBImage
BiocInstaller
GUI
convert
EBImage
BiocInstaller
updated 12.3 years ago by
Dan Tenenbaum
★ 8.2k • written 12.3 years ago by
Olin Silander
▴ 30
0
votes
1
reply
1.4k
views
Warnings with running easyRNASeq with easyRNASeq tutorial
RNASeq
Annotation
GUI
Cancer
BSgenome
BSgenome
easyRNASeq
RNASeq
Annotation
GUI
Cancer
updated 12.3 years ago by
delhomme@embl.de
★ 1.2k • written 12.3 years ago by
Richard Friedman
★ 2.0k
0
votes
2
replies
2.1k
views
How to extract expressed genes from Affymetrix data
GUI
GUI
updated 12.3 years ago by
Belinda Phipson
▴ 130 • written 12.4 years ago by
michelle_low
▴ 50
0
votes
9
replies
2.2k
views
R IDE editor
GUI
GUI
updated 12.6 years ago by
Aaron Brandes
▴ 10 • written 12.6 years ago by
Yue Li
▴ 370
0
votes
12
replies
2.7k
views
problem with loading DESeq after upgrading from R 2.14 to R 2.15
GUI
DESeq
DEXSeq
GUI
DESeq
DEXSeq
updated 12.6 years ago by
Yue Li
▴ 60 • written 12.6 years ago by
Yue Li
▴ 370
0
votes
0
replies
1.3k
views
iFlow error messages
GUI
iFlow
GUI
iFlow
12.8 years ago
Gabriel Nathan Kaufman, Mr
▴ 60
0
votes
2
replies
1.4k
views
Problems normalizing scanarray express data with limma
GUI
limma
a4
GUI
limma
a4
updated 12.9 years ago by
Gordon Smyth
51k • written 12.9 years ago by
Matthew Ouellette
▴ 10
0
votes
0
replies
1.1k
views
question/issue with multtest mt.maxT
Sequencing
Microarray
GUI
Category
Sequencing
Microarray
GUI
Category
13.5 years ago
Les Dethlefsen
▴ 20
0
votes
2
replies
1.7k
views
GGtools and GGBase installation problems
Infrastructure
GUI
Ruuid
GGtools
GGBase
Infrastructure
GUI
Ruuid
GGtools
GGBase
updated 13.7 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.7 years ago by
Neel Aluru
▴ 460
0
votes
1
reply
1.8k
views
GGtools and GGBase installation problems
GUI
GGtools
GGBase
GUI
GGtools
GGBase
updated 13.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.8 years ago by
Neel Aluru
▴ 460
0
votes
0
replies
1.2k
views
iFlow and current Bioconductor release
GUI
Cancer
iFlow
GUI
Cancer
iFlow
13.8 years ago
Chao-Jen Wong
▴ 580
0
votes
0
replies
1.0k
views
iFlow and current Bioconductor release
GUI
iFlow
GUI
iFlow
13.8 years ago
Gabriel Nathan Kaufman, Mr
▴ 60
0
votes
6
replies
1.6k
views
Unable to Generate QC Report for mogene10stv1
Annotation
GO
GUI
affy
PROcess
affyQCReport
Annotation
GO
GUI
affy
PROcess
affyQCReport
updated 13.9 years ago by
James W. MacDonald
67k • written 13.9 years ago by
Rick Frausto
▴ 110
0
votes
0
replies
1.5k
views
: [R] Problems wih EBImage for windows 7 --Loading required package: abind Error in library.dynam(lib, package, package.lib) : shared library 'EBImag…
GUI
convert
EBImage
GUI
convert
EBImage
13.9 years ago
Evan Misshula
▴ 80
0
votes
1
reply
2.1k
views
biomaRt - attribute mirbase is missing
SNP
miRNA
GUI
biomaRt
Vega
SNP
miRNA
GUI
biomaRt
Vega
updated 14.0 years ago by
Rhoda Kinsella
▴ 660 • written 14.0 years ago by
Neel Aluru
▴ 460
0
votes
0
replies
1.3k
views
EBImage installs but won't load on Mac OS 10.6.4
GO
GUI
PROcess
convert
EBImage
GO
GUI
PROcess
convert
EBImage
14.0 years ago
W. A. Green
▴ 40
0
votes
1
reply
1.3k
views
EBImage installs but won't load on Mac OS 10.6.4
GO
GUI
PROcess
convert
EBImage
GO
GUI
PROcess
convert
EBImage
updated 14.0 years ago by
W. A. Green
▴ 40 • written 14.0 years ago by
Gregoire Pau
▴ 310
1
vote
2
replies
3.4k
views
edgeR: error in readDGE
GUI
edgeR
GUI
edgeR
updated 14.0 years ago by
Wolfgang Huber
★ 13k • written 14.0 years ago by
村田 卓也
▴ 10
0
votes
0
replies
1.1k
views
Agi4x44PreProcess - filter.probes function
Annotation
GUI
zebrafish
probe
PROcess
Annotation
GUI
zebrafish
probe
PROcess
14.1 years ago
Neel Aluru
▴ 460
0
votes
3
replies
1.4k
views
EBImage installs but won't load on Mac OS 10.6.4
GUI
PROcess
convert
EBImage
GUI
PROcess
convert
EBImage
updated 14.1 years ago by
Gregoire Pau
▴ 310 • written 14.1 years ago by
W. A. Green
▴ 40
0
votes
0
replies
1.2k
views
Agi4x44PreProcess
GUI
zebrafish
probe
AgiMicroRna
GUI
zebrafish
probe
AgiMicroRna
14.2 years ago
Neel Aluru
▴ 460
0
votes
5
replies
2.3k
views
iFlow error in opening FCS and LMD files
GUI
iFlow
GUI
iFlow
updated 14.3 years ago by
Josef Spidlen
▴ 140 • written 14.3 years ago by
Anna Dvorkin
▴ 40
0
votes
0
replies
1.2k
views
launch of free R/Bioconductor Cloud Computing web-service
GUI
GUI
14.3 years ago
hbolouri@caltech.edu
▴ 10
0
votes
1
reply
1.0k
views
Rgraphviz in windows 7 - problem with GUI?
GUI
graph
Rgraphviz
GUI
graph
Rgraphviz
updated 14.4 years ago by
Hervé Pagès
16k • written 14.4 years ago by
Neta Zuckerman
▴ 10
0
votes
3
replies
1.4k
views
ShortRead report function crash in x86_64-apple
GUI
GUI
written 14.6 years ago by
Hugo Naya
▴ 20
0
votes
7
replies
1.6k
views
rMAT tutorial. Data file too large?
Preprocessing
GUI
rMAT
Preprocessing
GUI
rMAT
14.6 years ago
Patrick Schorderet
▴ 50
0
votes
1
reply
1.0k
views
iFlow error
GUI
iFlow
GUI
iFlow
updated 14.6 years ago by
Patrick Aboyoun
★ 1.6k • written 14.6 years ago by
Abbhirami Rajagopal
▴ 70
0
votes
1
reply
1.5k
views
iFlow
GUI
GUI
updated 14.6 years ago by
Patrick Aboyoun
★ 1.6k • written 14.6 years ago by
Abbhirami Rajagopal
▴ 70
0
votes
1
reply
991
views
Problems using rMAT tutorial
GUI
rMAT
GUI
rMAT
updated 14.6 years ago by
Wolfgang Huber
★ 13k • written 14.6 years ago by
Patrick Schorderet
▴ 50
0
votes
12
replies
3.7k
views
problems when trying to use biomaRt
GUI
biomaRt
GUI
biomaRt
updated 14.7 years ago by
Jenny Drnevich
★ 2.0k • written 14.7 years ago by
Juan Pablo Fededa
▴ 50
0
votes
0
replies
804
views
Fwd: problems when trying to use biomaRt
GUI
biomaRt
GUI
biomaRt
14.7 years ago
Sean Davis
21k
50 results • Page
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Replies
Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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