Bioconductor Grohmm

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groHMM

updated 2.5 years ago by Mike Smith ★ 6.6k • written 2.5 years ago by anusha.nagari ▴ 50

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groSeq groHMM

updated 6.1 years ago by anusha.nagari ▴ 50 • written 6.1 years ago by Deleted ▴ 70

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grohmm groseq next-generation sequencing R

6.2 years ago Deleted ▴ 70

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groHMM

updated 6.4 years ago by lee.kraus • 0 • written 6.4 years ago by warrena • 0

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Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

It's not informative except for me to say I was right that it's `getSeq` that is providing the error. It appears that `AddMotifs` is passin…

Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom by James W. MacDonald 67k

This support site is meant to help people with technical questions about using Bioconductor packages. Your question is probably better suit…

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0

This is the traceback I got after running AddMotifs if this is informative? ``` 23: stop(wmsg("trying to load regions beyond the boundaries…

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

You will probably have to ask the Signac people. I don't know exactly what is going on under the hood for `AddMotif`, but the `EnsDb` seems…

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0

Unfortunately I've updated my code with the newest GRCm39 genome, and yet I am still getting the same error.... Is there anything else I ca…

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Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Comment: does anyone how to create rarefaction curves from a phyloseq object?

Answer: ANOVA like approach of edgeR

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