Showing : grch37 • reset
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Transcript biotypes for ncRNA in GRCh37 using biomaRt?
grch37 transcripts biotype biomaRt ncrna
updated 6.4 years ago by 67k • written 6.4 years ago by ▴ 10
2
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1.2k
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Problems with Edge R normalization in same sample but using different ref genomes.
normalized counts grch37 grch38 r bioconductor
7.2 years ago salvocomplicazioni1 • 0
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problem using ensemblVEP with GRC37
ensemblvep grch37
7.6 years ago mikko.arvas • 0
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3
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1.4k
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Increased number of total exons in DEXSeq
dexseq exons grch37
7.8 years ago aditi ▴ 20
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News: Ensembl GRCh37 release 82 - second data update
ensembl biomart News grch37 GRCh37
9.2 years ago amonida ▴ 20
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News: Ensembl GRCh37 release 79 data update
biomart ensembl release news GRCh37 News
9.7 years ago Thomas Maurel ▴ 800
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biomaRt: SNP no access to grch37.ensembl.org
SNP biomart archive grch37
9.8 years ago mrprao • 0
13
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how to use biomaRt with ensembl build 37
biomaRt ensembl GRCh37
updated 10.2 years ago by ▴ 800 • written 10.2 years ago by ▴ 90
8 results • Page 1 of 1
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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