Bioconductor Gpos

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findOverlaps GPos GenomicRanges subsetByOverlaps

updated 3.0 years ago by James W. MacDonald 67k • written 3.0 years ago by Robert ▴ 10

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GenomicRanges unique GPos

3.5 years ago • updated 3.3 years ago maltethodberg ▴ 180

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876

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GenomicRanges GPos

4.7 years ago Charles Plessy ▴ 180

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genomicranges granges gpos

updated 5.6 years ago by Hervé Pagès 16k • written 6.3 years ago by maltethodberg ▴ 180

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1.2k

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genomicranges gpos granges

updated 6.3 years ago by Hervé Pagès 16k • written 6.3 years ago by maltethodberg ▴ 180

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1.3k

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software error snplocs gpos

updated 6.7 years ago by Hervé Pagès 16k • written 6.7 years ago by j.abbott • 0

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1.5k

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genomicranges gpos

updated 7.0 years ago by Hervé Pagès 16k • written 7.0 years ago by maltethodberg ▴ 180

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938

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genomicranges gpos

7.1 years ago maltethodberg ▴ 180

8 results • Page 1 of 1

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Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k

There is an example file in the extdata directory of the `minfiData` package that you could emulate.

Comment: Rain error: invalid annotation of time points by Dominik • 0

Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…

Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k

Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Votes

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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