Bioconductor Gpos

Showing : gpos • reset

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4.3k

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findOverlaps GPos GenomicRanges subsetByOverlaps

updated 3.1 years ago by James W. MacDonald 68k • written 3.1 years ago by Robert ▴ 10

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1.6k

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GenomicRanges unique GPos

3.6 years ago • updated 3.4 years ago maltethodberg ▴ 180

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887

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GenomicRanges GPos

4.8 years ago Charles Plessy ▴ 180

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1.3k

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genomicranges granges gpos

updated 5.7 years ago by Hervé Pagès 16k • written 6.4 years ago by maltethodberg ▴ 180

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genomicranges gpos granges

updated 6.4 years ago by Hervé Pagès 16k • written 6.4 years ago by maltethodberg ▴ 180

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1.3k

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software error snplocs gpos

updated 6.7 years ago by Hervé Pagès 16k • written 6.8 years ago by j.abbott • 0

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1.5k

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genomicranges gpos

updated 7.1 years ago by Hervé Pagès 16k • written 7.1 years ago by maltethodberg ▴ 180

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950

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genomicranges gpos

7.1 years ago maltethodberg ▴ 180

8 results • Page 1 of 1

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Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840

Dear Gordon, thanks a million for your reply (just saw it, did not get any notification through email) !! Regarding the log2 transformation…

Answer: cameraPR() non directional test by Gordon Smyth 52k

Yes, you can still do non-directional tests using cameraPR(), but it's not quite as easy as it was using the original camera() function as …

Answer: WGCNA with paired samples by Ivo • 0

You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …

Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

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Answer: limma::voom vs edgeR::voomLmFit - when to use?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: Plot title for PCA in DESeq2

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