Bioconductor Goslim

Showing : goslim • reset

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1.5k

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GO.db GOslim

17 months ago amanda • 0

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2.6k

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gseabase go gene ontology goslim

5.2 years ago • updated 2.1 years ago samwhite ▴ 20

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4.7k

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go GSEABase GOslim gene ontology

5.2 years ago • updated 2.1 years ago samwhite ▴ 20

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GSEA GO goSlim

7.6 years ago maeva.mollion • 0

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1.5k

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biomaRt goslim go

updated 8.5 years ago by Mike Smith ★ 6.6k • written 8.5 years ago by rubi ▴ 110

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1.6k

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gene ontology goslim enrichment analysis gene annotation

9.0 years ago mirko • 0

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Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You can use [bioc-run][1] to simplify things as well. [1]: https://github.com/Bioconductor/bioc-run/tree/devel

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You show how you modified the container, but not how you are running it, which is the critical part.

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply. > Per sample all counts are scaled by the same size factor so I strongly assume that something was parsed here …

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

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Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

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